Variant report

Variant	rs7424028
Chromosome Location	chr2:141011136-141011137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10180435	0.83[CEU][hapmap]
rs10469593	0.83[CEU][hapmap]
rs11895946	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12104972	0.83[CEU][hapmap]
rs12477489	0.82[AMR][1000 genomes]
rs12612910	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12616889	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13021003	1.00[CEU][hapmap]
rs13413773	1.00[CEU][hapmap]
rs1386356	0.87[CEU][hapmap]
rs1492393	0.87[CEU][hapmap]
rs2839772	0.81[EUR][1000 genomes]
rs7579083	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7581796	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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