Variant report

Variant	rs13021003
Chromosome Location	chr2:141013919-141013920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10180435	0.83[CEU][hapmap]
rs10195473	0.85[CHB][hapmap]
rs10469558	0.93[CHB][hapmap]
rs10469593	0.83[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs10496839	0.93[CHB][hapmap]
rs10496840	0.93[CHB][hapmap]
rs11895946	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12104972	0.83[CEU][hapmap]
rs12464830	0.86[CHB][hapmap]
rs12477489	0.93[CHB][hapmap];0.88[CHD][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs12479163	0.93[CHB][hapmap];0.87[MEX][hapmap]
rs12612910	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12616889	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13010738	0.87[CHB][hapmap]
rs13413773	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13424233	0.93[CHB][hapmap]
rs1386356	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1388809	1.00[CHB][hapmap]
rs1486963	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs1492393	0.87[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs1518441	0.93[CHB][hapmap]
rs1532001	0.92[CHB][hapmap]
rs16843689	0.85[CHB][hapmap]
rs2029628	0.86[CHB][hapmap]
rs2171322	0.93[CHB][hapmap];0.87[MEX][hapmap]
rs2839772	0.85[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs598786	0.86[CHB][hapmap]
rs607494	0.93[CHB][hapmap]
rs654051	0.86[CHB][hapmap]
rs6717281	1.00[CHB][hapmap]
rs6755822	1.00[CHB][hapmap]
rs7340225	0.87[CHB][hapmap]
rs7424028	1.00[CEU][hapmap]
rs7567150	0.87[CHB][hapmap]
rs7579083	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7581796	0.83[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs982233	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13021003	CHD2	trans	cerebellum	SCAN
rs13021003	NXPH2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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