Variant report

Variant	rs13010738
Chromosome Location	chr2:141149786-141149787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10195473	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10469558	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs10496839	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10496840	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11896219	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12464830	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12477489	0.87[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12479163	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12612910	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs13021003	0.87[CHB][hapmap]
rs13413773	0.94[CHB][hapmap]
rs13424233	0.87[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap]
rs1386356	0.94[CHB][hapmap]
rs1388809	0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs1486961	0.82[CEU][hapmap]
rs1486963	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1492393	0.81[CHB][hapmap]
rs1518441	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1532001	0.82[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2029628	0.88[CEU][hapmap]
rs2171322	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs598786	0.94[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap]
rs607494	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs654051	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6717281	0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs6755822	0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs72896229	0.81[ASN][1000 genomes]
rs7340225	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7567150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs825429	0.81[YRI][hapmap]
rs982233	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141142800-141151800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141148000-141150600	Enhancers	A549	lung
3	chr2:141149400-141150400	Enhancers	Fetal Intestine Large	intestine
4	chr2:141149400-141150800	Enhancers	HepG2	liver
5	chr2:141149600-141150000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:141149600-141150000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:141149600-141150800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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