Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:140988006..140990694-chr2:140993986..140995615,2	MCF-7	breast:
2	chr2:140989005..140991875-chr2:140992469..140995241,2	MCF-7	breast:
3	chr2:140987688..140989881-chr2:140993819..140996733,2	K562	blood:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10180435	1.00[CHB][hapmap]
rs10195473	0.89[CEU][hapmap]
rs10469558	0.94[CEU][hapmap]
rs10469593	0.95[CHB][hapmap]
rs1047874	0.95[CHB][hapmap]
rs10928746	0.84[EUR][1000 genomes]
rs11895946	0.82[ASN][1000 genomes]
rs12104972	1.00[CHB][hapmap]
rs12476338	0.86[EUR][1000 genomes]
rs12477489	0.94[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12479163	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12612910	0.94[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12616889	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13010738	0.82[CEU][hapmap]
rs13387241	0.95[CHB][hapmap]
rs13416149	0.95[CHB][hapmap]
rs13424233	0.94[CEU][hapmap]
rs1388809	0.94[CEU][hapmap];0.97[YRI][hapmap]
rs1486958	0.95[CHB][hapmap]
rs1486963	0.94[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1486968	0.95[CHB][hapmap]
rs1492388	0.95[CHB][hapmap]
rs1518441	0.89[CEU][hapmap]
rs2029628	0.94[CEU][hapmap];0.93[YRI][hapmap]
rs2029629	0.95[CHB][hapmap]
rs2046566	0.95[CHB][hapmap]
rs2171322	0.89[CEU][hapmap]
rs2839772	0.95[CHB][hapmap]
rs598786	0.89[CEU][hapmap];0.83[YRI][hapmap]
rs607494	0.89[CEU][hapmap]
rs654051	0.89[CEU][hapmap]
rs6717281	0.94[CEU][hapmap]
rs6743080	0.95[CHB][hapmap];0.93[ASN][1000 genomes]
rs6755822	0.94[CEU][hapmap]
rs7340225	0.84[CEU][hapmap]
rs7567150	0.84[CEU][hapmap]
rs7581796	0.95[CHB][hapmap]
rs982233	0.89[CEU][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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