Variant report

Variant	rs654051
Chromosome Location	chr2:141083159-141083160
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10195473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10469558	0.94[CEU][hapmap];0.93[CHB][hapmap]
rs10496839	0.85[CHB][hapmap];0.95[CHD][hapmap]
rs10496840	0.84[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap]
rs10928746	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11896219	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12476338	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12477489	0.94[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs12479163	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12612910	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs12616889	0.83[EUR][1000 genomes]
rs13010738	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13021003	0.86[CHB][hapmap]
rs13413773	0.93[CHB][hapmap]
rs13424233	0.94[CEU][hapmap]
rs1386356	0.93[CHB][hapmap]
rs1388809	0.94[CEU][hapmap];0.86[CHB][hapmap]
rs1486961	0.89[CEU][hapmap]
rs1486963	0.94[CEU][hapmap];0.86[CHB][hapmap];0.85[TSI][hapmap]
rs1492393	0.87[CHB][hapmap];0.88[CHD][hapmap]
rs1518441	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs1532001	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2029628	0.94[CEU][hapmap]
rs2171322	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs2945572	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs55945474	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs598786	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs607494	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62171603	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs638198	0.83[YRI][hapmap]
rs650706	0.82[ASW][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs655308	0.81[ASW][hapmap];0.90[YRI][hapmap]
rs667446	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs6717281	0.94[CEU][hapmap];0.86[CHB][hapmap]
rs6755822	0.94[CEU][hapmap];0.86[CHB][hapmap]
rs72894048	0.85[ASN][1000 genomes]
rs7340225	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7567150	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs982233	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141082600-141083200	Enhancers	Dnd41	blood

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