Variant report

Variant	rs655308
Chromosome Location	chr2:141105329-141105330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12692048	0.80[AMR][1000 genomes]
rs12992137	0.91[MEX][hapmap];0.80[AMR][1000 genomes]
rs13001299	0.83[MEX][hapmap]
rs13002228	0.91[MEX][hapmap]
rs13004107	0.91[MEX][hapmap]
rs13407545	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1386355	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1518450	0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2046563	0.91[MEX][hapmap]
rs2945572	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597222	0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs600802	0.96[MEX][hapmap];0.83[YRI][hapmap]
rs603956	0.84[YRI][hapmap]
rs607494	0.90[YRI][hapmap]
rs623670	0.96[MEX][hapmap];0.83[YRI][hapmap]
rs634115	0.95[CHB][hapmap]
rs638198	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs639195	0.83[YRI][hapmap];0.84[AMR][1000 genomes]
rs649284	0.91[CEU][hapmap]
rs650706	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs651125	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs654051	0.81[ASW][hapmap];0.90[YRI][hapmap]
rs667446	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs6755087	0.87[CEU][hapmap];0.90[CHB][hapmap]
rs7340225	0.82[YRI][hapmap]
rs825429	0.96[MEX][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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