Variant report

Variant	rs634115
Chromosome Location	chr2:141128977-141128978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10202846	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13017246	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13382933	0.82[AMR][1000 genomes]
rs13414281	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1968910	0.81[YRI][hapmap]
rs2945572	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs591185	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs595789	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638198	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs650706	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs651125	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs652923	0.90[AMR][1000 genomes]
rs655308	0.95[CHB][hapmap]
rs6755087	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7563544	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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