Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10469558	0.81[YRI][hapmap]
rs12477489	0.93[YRI][hapmap]
rs12612910	0.90[YRI][hapmap]
rs12692048	0.85[AMR][1000 genomes]
rs12992137	0.83[AMR][1000 genomes]
rs13002228	0.82[AMR][1000 genomes]
rs1388809	0.81[YRI][hapmap]
rs1486963	0.83[YRI][hapmap]
rs2046563	0.84[AMR][1000 genomes]
rs2945572	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs595789	0.93[ASN][1000 genomes]
rs597222	0.87[AMR][1000 genomes]
rs598786	0.96[YRI][hapmap]
rs634115	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs639195	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs649284	0.88[CEU][hapmap]
rs650706	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs651125	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs654051	0.83[YRI][hapmap]
rs655308	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs667446	0.92[CEU][hapmap]
rs6755087	0.84[CEU][hapmap];0.95[CHB][hapmap];0.92[YRI][hapmap]
rs825429	0.81[AMR][1000 genomes]
rs982233	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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