Variant report

Variant	rs1486963
Chromosome Location	chr2:140992063-140992064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10195473	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10469558	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10496839	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10496840	0.93[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs10928746	0.84[EUR][1000 genomes]
rs12464830	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12476338	0.86[EUR][1000 genomes]
rs12477489	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12479163	0.94[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes]
rs12612910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12616889	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13010738	0.87[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13021003	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs13413773	0.93[CHB][hapmap]
rs13424233	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1386356	0.93[CHB][hapmap]
rs1388809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1486961	0.94[CEU][hapmap];0.96[YRI][hapmap]
rs1492393	0.81[CHB][hapmap]
rs1518441	0.94[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1532001	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs16843689	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2029628	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs2171322	0.94[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap]
rs598786	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap]
rs607494	0.94[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs638198	0.83[YRI][hapmap]
rs654051	0.94[CEU][hapmap];0.86[CHB][hapmap];0.85[TSI][hapmap]
rs6717281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7340225	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7567150	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs982233	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:140991000-140992400	Enhancers	Fetal Lung	lung

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