Variant report

Variant	rs10496839
Chromosome Location	chr2:141049869-141049870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10195473	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10469558	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10496840	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs10928746	0.85[ASN][1000 genomes]
rs12464830	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs12476338	0.85[ASN][1000 genomes]
rs12477489	0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12479163	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12612910	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13010738	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs13021003	0.93[CHB][hapmap]
rs13413773	0.93[CHB][hapmap]
rs13424233	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1386356	0.93[CHB][hapmap]
rs1388809	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1486963	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1492393	0.80[CHB][hapmap];0.88[CHD][hapmap]
rs1518441	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1532001	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs16843689	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs2171322	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs55945474	0.89[ASN][1000 genomes]
rs598786	0.85[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs607494	0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs62171603	0.91[ASN][1000 genomes]
rs654051	0.85[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs6717281	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6755822	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs72894048	0.92[ASN][1000 genomes]
rs72896229	0.87[ASN][1000 genomes]
rs7340225	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7567150	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs982233	0.93[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3409412	chr2:141048511-141049963	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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