Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141030971..141033718-chr2:141035593..141037981,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10180435	0.96[CEU][hapmap]
rs10195473	0.94[CHB][hapmap]
rs10469558	1.00[CHB][hapmap]
rs10469593	0.96[CEU][hapmap]
rs10496839	0.93[CHB][hapmap]
rs10496840	1.00[CHB][hapmap]
rs10928746	0.83[ASN][1000 genomes]
rs11895946	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12104972	0.96[CEU][hapmap]
rs12464830	0.81[CHB][hapmap]
rs12476338	0.83[ASN][1000 genomes]
rs12477489	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12479163	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12612910	0.94[CHB][hapmap]
rs13010738	0.94[CHB][hapmap]
rs13021003	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13413773	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13424233	0.87[CHB][hapmap]
rs1388809	0.94[CHB][hapmap]
rs1486963	0.93[CHB][hapmap]
rs1492393	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1518441	1.00[CHB][hapmap]
rs1532001	1.00[CHB][hapmap]
rs2029628	0.81[CHB][hapmap]
rs2171322	1.00[CHB][hapmap]
rs2839772	0.91[CEU][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs598786	0.93[CHB][hapmap]
rs607494	1.00[CHB][hapmap]
rs654051	0.93[CHB][hapmap]
rs6717281	0.94[CHB][hapmap]
rs6755822	0.94[CHB][hapmap]
rs7340225	0.94[CHB][hapmap]
rs7424028	0.87[CEU][hapmap]
rs7567150	0.94[CHB][hapmap]
rs7579083	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7581796	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs982233	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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