Variant report
| Variant | rs13413773 |
|---|---|
| Chromosome Location | chr2:141025342-141025343 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10180435 | 0.84[CEU][hapmap] |
| rs10195473 | 0.94[CHB][hapmap] |
| rs10469558 | 1.00[CHB][hapmap];0.90[YRI][hapmap] |
| rs10469593 | 0.83[CEU][hapmap] |
| rs10496839 | 0.93[CHB][hapmap] |
| rs10496840 | 1.00[CHB][hapmap] |
| rs10928746 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11895946 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12104972 | 0.84[CEU][hapmap] |
| rs12464830 | 0.81[CHB][hapmap] |
| rs12476338 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12477489 | 1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12479163 | 1.00[CHB][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12612910 | 0.94[CHB][hapmap];0.86[AMR][1000 genomes] |
| rs12616889 | 0.87[AMR][1000 genomes] |
| rs13010738 | 0.94[CHB][hapmap] |
| rs13021003 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs13424233 | 0.87[CHB][hapmap] |
| rs1386356 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1388809 | 0.94[CHB][hapmap] |
| rs1486963 | 0.93[CHB][hapmap] |
| rs1492393 | 0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs1518441 | 1.00[CHB][hapmap] |
| rs1532001 | 1.00[CHB][hapmap] |
| rs2029628 | 0.81[CHB][hapmap] |
| rs2171322 | 1.00[CHB][hapmap];0.89[YRI][hapmap] |
| rs2839772 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs598786 | 0.93[CHB][hapmap] |
| rs607494 | 1.00[CHB][hapmap] |
| rs62171603 | 0.81[AMR][1000 genomes] |
| rs654051 | 0.93[CHB][hapmap] |
| rs6717281 | 0.94[CHB][hapmap];0.86[YRI][hapmap] |
| rs6755822 | 0.94[CHB][hapmap] |
| rs7340225 | 0.94[CHB][hapmap] |
| rs7424028 | 1.00[CEU][hapmap] |
| rs7567150 | 0.94[CHB][hapmap] |
| rs7579083 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7581796 | 0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs982233 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| 4 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
