Variant report

Variant	rs1388809
Chromosome Location	chr2:140998670-140998671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10195473	0.94[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10469558	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10496839	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10496840	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs10928746	0.85[EUR][1000 genomes]
rs12464830	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12476338	0.87[EUR][1000 genomes]
rs12477489	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12479163	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs12612910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12616889	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13010738	0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs13021003	1.00[CHB][hapmap]
rs13413773	0.94[CHB][hapmap]
rs13424233	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1386356	0.94[CHB][hapmap]
rs1486961	0.94[CEU][hapmap];0.97[YRI][hapmap]
rs1486963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492393	0.81[CHB][hapmap]
rs1518441	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1532001	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs16843689	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2029628	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[YRI][hapmap]
rs2171322	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs598786	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs607494	0.94[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs638198	0.81[YRI][hapmap]
rs654051	0.94[CEU][hapmap];0.86[CHB][hapmap]
rs6717281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7340225	0.89[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7567150	0.89[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs982233	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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