Variant report

Variant	rs2945572
Chromosome Location	chr2:141096291-141096292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141096050..141098665-chr2:141100590..141102243,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12477489	0.94[ASW][hapmap]
rs12692048	0.86[AMR][1000 genomes]
rs12992137	0.91[MEX][hapmap];0.86[AMR][1000 genomes]
rs13001299	0.83[MEX][hapmap]
rs13002228	0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13004107	0.91[MEX][hapmap]
rs1386355	0.82[AMR][1000 genomes]
rs1518450	0.91[MEX][hapmap];0.80[AMR][1000 genomes]
rs2046563	0.91[MEX][hapmap];0.85[AMR][1000 genomes]
rs595789	0.83[ASN][1000 genomes]
rs597222	0.90[AMR][1000 genomes]
rs598786	0.94[ASW][hapmap]
rs600802	0.96[MEX][hapmap]
rs607494	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs623670	0.96[MEX][hapmap]
rs634115	0.95[CHB][hapmap]
rs638198	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs639195	0.90[AMR][1000 genomes]
rs649284	0.96[CEU][hapmap]
rs650706	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs651125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs654051	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs655308	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs667446	0.88[ASW][hapmap];0.92[CEU][hapmap];0.91[GIH][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs6755087	0.91[CEU][hapmap];0.90[CHB][hapmap]
rs682371	0.83[AMR][1000 genomes]
rs7340225	0.93[YRI][hapmap]
rs825429	0.96[MEX][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141094800-141096400	Enhancers	Duodenum Mucosa	Duodenum
2	chr2:141095800-141096600	Enhancers	Fetal Intestine Small	intestine
3	chr2:141096000-141096800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:141096000-141097000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:141096200-141096600	Enhancers	Small Intestine	intestine

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