Variant report

Variant	rs2046565
Chromosome Location	chr2:140998957-140998958
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12692042	0.94[CHB][hapmap]
rs12692049	0.93[CHB][hapmap]
rs12692050	0.89[CEU][hapmap];0.88[JPT][hapmap]
rs12992137	0.81[CHB][hapmap]
rs12996989	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs12999447	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs13001299	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002228	0.81[CHB][hapmap]
rs13004107	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13005209	0.88[CHB][hapmap]
rs13009775	0.94[CHB][hapmap]
rs13017246	0.81[CHB][hapmap]
rs13021878	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs13382933	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs13386580	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs1401121	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1401122	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap]
rs1486967	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1518450	0.81[CHB][hapmap]
rs17385521	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17477145	0.82[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1968911	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2046563	0.93[CHB][hapmap]
rs35699793	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs597222	0.87[CHB][hapmap]
rs600802	0.81[CHB][hapmap]
rs633689	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs639195	0.87[CHB][hapmap]
rs6430898	0.82[CHB][hapmap]
rs652923	0.87[CHB][hapmap]
rs658631	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs667446	0.81[CHB][hapmap]
rs7563544	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs7567599	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs825429	0.81[CHB][hapmap]
rs902844	0.86[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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