Variant report

Variant	rs632005
Chromosome Location	chr10:55320515-55320516
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55313361..55315052-chr10:55318156..55320737,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11527477	0.85[AFR][1000 genomes]
rs11527478	0.84[AFR][1000 genomes]
rs1762109	0.84[AFR][1000 genomes]
rs2484208	0.86[AFR][1000 genomes]
rs2484209	0.97[AFR][1000 genomes]
rs2632535	0.83[AFR][1000 genomes]
rs34095257	0.86[AFR][1000 genomes]
rs34632242	0.86[AFR][1000 genomes]
rs35424889	0.84[AFR][1000 genomes]
rs35891588	0.86[AFR][1000 genomes]
rs364694	0.86[AFR][1000 genomes]
rs365966	0.84[AFR][1000 genomes]
rs371543	0.97[AFR][1000 genomes]
rs372338	0.84[AFR][1000 genomes]
rs374891	0.83[AFR][1000 genomes]
rs376278	0.86[AFR][1000 genomes]
rs381979	0.86[AFR][1000 genomes]
rs389244	0.90[AFR][1000 genomes]
rs392293	0.92[AFR][1000 genomes]
rs392668	0.86[AFR][1000 genomes]
rs394942	0.97[AFR][1000 genomes]
rs399032	0.86[AFR][1000 genomes]
rs399606	0.97[AFR][1000 genomes]
rs407337	0.96[AFR][1000 genomes]
rs407646	0.97[AFR][1000 genomes]
rs409001	0.97[AFR][1000 genomes]
rs409369	0.85[AFR][1000 genomes]
rs413137	0.97[AFR][1000 genomes]
rs414849	0.84[AFR][1000 genomes]
rs418047	0.85[AFR][1000 genomes]
rs420314	0.97[AFR][1000 genomes]
rs423146	0.93[AFR][1000 genomes]
rs423384	0.97[AFR][1000 genomes]
rs423806	0.97[AFR][1000 genomes]
rs427506	0.86[AFR][1000 genomes]
rs428127	0.86[AFR][1000 genomes]
rs428467	0.94[AFR][1000 genomes]
rs428563	0.97[AFR][1000 genomes]
rs430495	0.97[AFR][1000 genomes]
rs437390	0.84[AFR][1000 genomes]
rs440743	0.86[AFR][1000 genomes]
rs443931	0.97[AFR][1000 genomes]
rs444728	0.86[AFR][1000 genomes]
rs445488	0.97[AFR][1000 genomes]
rs450516	0.97[AFR][1000 genomes]
rs451452	0.86[AFR][1000 genomes]
rs451485	0.97[AFR][1000 genomes]
rs451607	0.90[AFR][1000 genomes]
rs454270	0.91[AFR][1000 genomes]
rs455078	0.86[AFR][1000 genomes]
rs4628595	0.92[AFR][1000 genomes]
rs596456	0.86[AFR][1000 genomes]
rs598529	0.84[AFR][1000 genomes]
rs598536	0.84[AFR][1000 genomes]
rs607228	0.86[AFR][1000 genomes]
rs609908	0.86[AFR][1000 genomes]
rs610251	0.84[AFR][1000 genomes]
rs61859905	0.85[AFR][1000 genomes]
rs61859906	0.84[AFR][1000 genomes]
rs61859907	0.85[AFR][1000 genomes]
rs61859908	0.86[AFR][1000 genomes]
rs636340	0.85[AFR][1000 genomes]
rs637714	0.82[AFR][1000 genomes]
rs6415918	0.95[AFR][1000 genomes]
rs6481016	0.89[AFR][1000 genomes]
rs658983	0.85[AFR][1000 genomes]
rs659014	0.85[AFR][1000 genomes]
rs659421	0.85[AFR][1000 genomes]
rs663624	0.86[AFR][1000 genomes]
rs665850	0.86[AFR][1000 genomes]
rs66668165	0.86[AFR][1000 genomes]
rs66678299	0.82[AFR][1000 genomes]
rs668014	0.96[AFR][1000 genomes]
rs668434	0.93[AFR][1000 genomes]
rs674159	0.85[AFR][1000 genomes]
rs678459	0.86[AFR][1000 genomes]
rs7898607	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv20996	chr10:55318849-55328766	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv825388	chr10:55320235-55328054	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv825389	chr10:55320493-55320948	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55316000-55323400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:55316200-55323800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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