Variant report

Variant	rs632797
Chromosome Location	chr10:6535825-6535826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12770487	1.00[CHD][hapmap]
rs579050	1.00[ASW][hapmap]
rs591743	1.00[ASW][hapmap]
rs599305	1.00[ASW][hapmap]
rs601150	1.00[ASW][hapmap]
rs605556	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes]
rs608588	0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs621289	0.93[AFR][1000 genomes]
rs653760	0.90[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6496600-6539200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:6498400-6537000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
4	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:6509200-6541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:6514000-6540000	Weak transcription	Psoas Muscle	Psoas
8	chr10:6517200-6557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:6517600-6539600	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:6517600-6541800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:6518200-6556800	Weak transcription	Fetal Intestine Large	intestine
12	chr10:6519200-6544400	Weak transcription	Spleen	Spleen
13	chr10:6521000-6537200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:6525800-6539400	Weak transcription	Primary B cells from cord blood	blood
15	chr10:6526600-6553000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:6527400-6542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:6528400-6537200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:6528400-6540800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:6528600-6537200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:6529000-6546200	Weak transcription	Esophagus	oesophagus
21	chr10:6529000-6552800	Weak transcription	Lung	lung
22	chr10:6529400-6536000	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:6530400-6552600	Weak transcription	K562	blood
24	chr10:6532200-6536000	Weak transcription	Fetal Stomach	stomach
25	chr10:6533000-6536200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr10:6533000-6536200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:6533000-6537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:6533200-6536000	Weak transcription	Pancreas	Pancrea
29	chr10:6533600-6536000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:6533600-6536200	Flanking Active TSS	NHEK	skin
31	chr10:6533600-6539800	Weak transcription	Brain Substantia Nigra	brain
32	chr10:6533800-6536600	Strong transcription	Thymus	Thymus
33	chr10:6533800-6552800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:6534000-6536200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:6534000-6537400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:6534200-6537200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:6534400-6536200	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:6534400-6545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:6534600-6536000	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:6534600-6536800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:6534800-6536000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr10:6535000-6537000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr10:6535200-6536400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr10:6535200-6536600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:6535200-6536600	Enhancers	HMEC	breast
46	chr10:6535200-6536800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:6535200-6537800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr10:6535400-6536200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:6535400-6536800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:6535400-6537800	Genic enhancers	Primary T cells from cord blood	blood

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