Variant report

Variant	rs653760
Chromosome Location	chr10:6540089-6540090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6536042..6540361-chr10:6554431..6558363,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs541670	1.00[YRI][hapmap]
rs568368	1.00[YRI][hapmap]
rs605556	0.90[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs608588	0.88[YRI][hapmap]
rs632797	0.90[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5687	chr10:6537209-6556751	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6499200-6562000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:6501800-6557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:6509200-6541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:6517200-6557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:6517600-6541800	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:6518200-6556800	Weak transcription	Fetal Intestine Large	intestine
8	chr10:6519200-6544400	Weak transcription	Spleen	Spleen
9	chr10:6526600-6553000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:6527400-6542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:6528400-6540800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:6529000-6546200	Weak transcription	Esophagus	oesophagus
13	chr10:6529000-6552800	Weak transcription	Lung	lung
14	chr10:6530400-6552600	Weak transcription	K562	blood
15	chr10:6533800-6552800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:6534400-6545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:6535400-6553400	Weak transcription	Gastric	stomach
18	chr10:6536000-6541400	Strong transcription	Fetal Muscle Leg	muscle
19	chr10:6536200-6540800	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr10:6536600-6552800	Weak transcription	Fetal Intestine Small	intestine
21	chr10:6536800-6540800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:6537000-6540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:6537000-6540400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:6537200-6540400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:6537200-6540800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:6537400-6552800	Weak transcription	Fetal Stomach	stomach
27	chr10:6537600-6544200	Weak transcription	Pancreas	Pancrea
28	chr10:6537600-6552600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:6537800-6540200	Strong transcription	Primary T cells from cord blood	blood
30	chr10:6537800-6540200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr10:6537800-6540400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:6537800-6540400	Weak transcription	HMEC	breast
33	chr10:6537800-6540600	Strong transcription	Thymus	Thymus
34	chr10:6537800-6540600	Weak transcription	NHEK	skin
35	chr10:6537800-6543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:6537800-6548600	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:6537800-6548800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:6538000-6540200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:6538000-6540200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:6538000-6540200	Strong transcription	Fetal Thymus	thymus
41	chr10:6538000-6546800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:6538200-6552800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:6538800-6540200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr10:6539000-6540200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:6539000-6540800	Enhancers	Fetal Brain Male	brain
46	chr10:6539200-6540200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr10:6539200-6540600	Enhancers	Brain Germinal Matrix	brain
48	chr10:6539200-6542000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr10:6539400-6540400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:6539400-6541400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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