Variant report

Variant	rs632873
Chromosome Location	chr11:86180365-86180366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86179427..86181701-chr11:86193017..86195846,2	MCF-7	breast:
2	chr11:86174318..86177254-chr11:86179008..86180936,2	MCF-7	breast:
3	chr11:86178752..86182800-chr11:86185085..86187353,3	MCF-7	breast:
4	chr11:86179345..86181640-chr11:86202396..86204144,2	MCF-7	breast:
5	chr11:86170892..86174262-chr11:86177724..86181309,3	MCF-7	breast:
6	chr11:86180136..86183089-chr11:86192134..86195122,2	MCF-7	breast:
7	chr11:86177770..86180382-chr11:86184781..86186333,2	K562	blood:
8	chr11:86176037..86178777-chr11:86179586..86181565,2	MCF-7	breast:

No data

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11234691	0.95[JPT][hapmap]
rs1458383	0.82[ASN][1000 genomes]
rs2446224	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2446225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2446230	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2511082	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2511083	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs579719	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs582282	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs583594	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs584953	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs587362	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs601646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610476	0.82[ASN][1000 genomes]
rs610790	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs611730	0.92[CEU][hapmap];0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs614995	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs616794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs621653	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630454	0.81[ASN][1000 genomes]
rs631082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs638492	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs641541	0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs643414	0.86[ASN][1000 genomes]
rs647561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs653715	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs658324	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs660372	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs661163	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs661328	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs669325	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs675775	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs676106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677301	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs677643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs679977	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs681333	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs683899	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
2	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
5	chr11:86170200-86187200	Weak transcription	Stomach Mucosa	stomach
6	chr11:86171200-86197800	Weak transcription	Esophagus	oesophagus
7	chr11:86171600-86180400	Weak transcription	Gastric	stomach
8	chr11:86171800-86187200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:86171800-86188800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:86172000-86180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:86172200-86180600	Weak transcription	Osteobl	bone
12	chr11:86172200-86181000	Weak transcription	NHDF-Ad	bronchial
13	chr11:86172200-86184800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:86172200-86208200	Weak transcription	Pancreas	Pancrea
15	chr11:86172400-86183400	Weak transcription	Fetal Heart	heart
16	chr11:86172400-86192800	Weak transcription	Brain Anterior Caudate	brain
17	chr11:86172400-86208400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:86172600-86180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:86172600-86180600	Weak transcription	Fetal Lung	lung
21	chr11:86172600-86180800	Weak transcription	Right Ventricle	heart
22	chr11:86172600-86184600	Weak transcription	HSMM	muscle
23	chr11:86172600-86187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:86172600-86194800	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:86172800-86180400	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:86172800-86180800	Weak transcription	Spleen	Spleen
27	chr11:86172800-86184800	Weak transcription	HUVEC	blood vessel
28	chr11:86172800-86188800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:86173600-86180600	Weak transcription	Small Intestine	intestine
30	chr11:86174600-86180600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:86174600-86181000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:86174600-86185000	Weak transcription	Lung	lung
33	chr11:86174600-86187200	Weak transcription	Fetal Intestine Small	intestine
34	chr11:86174600-86187200	Weak transcription	Fetal Stomach	stomach
35	chr11:86174600-86188800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:86174800-86180800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:86174800-86185400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:86175400-86195400	Weak transcription	Brain Germinal Matrix	brain
39	chr11:86175800-86180400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr11:86175800-86184600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:86176000-86184600	Weak transcription	Adipose Nuclei	Adipose
42	chr11:86176200-86180400	Weak transcription	Ovary	ovary
43	chr11:86176200-86180600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:86176200-86180800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:86176200-86185000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:86176200-86187200	Weak transcription	Fetal Brain Female	brain
47	chr11:86176400-86180400	Weak transcription	Left Ventricle	heart
48	chr11:86176400-86185000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:86176600-86180400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:86176600-86197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links