Variant report

Variant	rs677301
Chromosome Location	chr11:86227988-86227989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86221748..86224210-chr11:86226851..86228577,2	MCF-7	breast:
2	chr11:86227984..86231236-chr11:86233662..86235563,3	MCF-7	breast:
3	chr11:86221104..86225436-chr11:86225475..86228538,5	K562	blood:
4	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:
5	chr11:86221142..86225436-chr11:86225475..86228641,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751139	0.88[ASN][1000 genomes]
rs11234691	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2446224	0.86[CHB][hapmap]
rs2446225	0.90[CHB][hapmap]
rs2446230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2511082	0.85[CHB][hapmap]
rs4944588	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs579719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs582282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs583594	0.90[CHB][hapmap]
rs584953	0.90[CHB][hapmap]
rs587362	0.87[ASN][1000 genomes]
rs590750	0.97[ASN][1000 genomes]
rs601646	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs610790	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs611730	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs614995	0.90[CHB][hapmap]
rs616794	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs620054	0.95[ASN][1000 genomes]
rs630454	0.84[ASN][1000 genomes]
rs631082	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs632873	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs633708	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs638492	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs641541	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs643414	0.89[ASN][1000 genomes]
rs647561	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs651758	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs653715	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs658324	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs660372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs661163	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs663208	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs664613	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs669325	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs675775	0.85[CHB][hapmap]
rs676106	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs677643	0.90[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs679977	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs681333	0.87[ASN][1000 genomes]
rs683899	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86211600-86229800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:86215000-86229800	Weak transcription	Lung	lung
3	chr11:86215800-86230000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:86218000-86228000	Weak transcription	Fetal Brain Female	brain
5	chr11:86218600-86229600	Weak transcription	Brain Germinal Matrix	brain
6	chr11:86220000-86230600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:86223000-86229800	Weak transcription	Gastric	stomach
8	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
9	chr11:86223200-86230600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:86224600-86229200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:86224600-86230000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:86224600-86230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:86224800-86229600	Weak transcription	Small Intestine	intestine
16	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:86225000-86228600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:86225000-86230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:86225400-86231000	Enhancers	NHEK	skin
20	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
21	chr11:86225600-86228200	Weak transcription	Psoas Muscle	Psoas
22	chr11:86225600-86230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:86226200-86229200	Weak transcription	Fetal Kidney	kidney
25	chr11:86226200-86229200	Enhancers	HMEC	breast
26	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:86226400-86228000	Enhancers	Right Atrium	heart
28	chr11:86226400-86228000	Enhancers	NH-A	brain
29	chr11:86226400-86228600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:86226400-86229200	Enhancers	NHDF-Ad	bronchial
31	chr11:86226400-86231400	Enhancers	Osteobl	bone
32	chr11:86226600-86228000	Enhancers	Fetal Heart	heart
33	chr11:86226600-86228800	Enhancers	A549	lung
34	chr11:86226600-86229200	Enhancers	K562	blood
35	chr11:86226800-86228000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:86227000-86228000	Weak transcription	Left Ventricle	heart
37	chr11:86227000-86228200	Weak transcription	Fetal Intestine Large	intestine
38	chr11:86227000-86228400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:86227000-86228600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:86227000-86229200	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:86227000-86229400	Weak transcription	Fetal Stomach	stomach
42	chr11:86227000-86229600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:86227000-86229600	Weak transcription	Placenta	Placenta
44	chr11:86227000-86229800	Weak transcription	Aorta	Aorta
45	chr11:86227000-86229800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:86227000-86230200	Weak transcription	Adipose Nuclei	Adipose
47	chr11:86227000-86230800	Weak transcription	Spleen	Spleen
48	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum

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