Variant report

Variant	rs651758
Chromosome Location	chr11:86235710-86235711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86233949..86236117-chr11:86381379..86384296,2	MCF-7	breast:
2	chr11:86013660..86015868-chr11:86235501..86237829,2	K562	blood:
3	chr11:86197110..86198736-chr11:86234162..86236654,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149196	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10751139	0.90[AMR][1000 genomes]
rs2446230	0.84[ASN][1000 genomes]
rs4944588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs579719	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs582282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590750	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs620054	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs633708	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs638492	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs641541	0.84[ASN][1000 genomes]
rs658324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs660372	0.84[ASN][1000 genomes]
rs677301	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
2	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86231400-86237400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86231800-86236600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:86231800-86237000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86231800-86237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
9	chr11:86232200-86238600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
11	chr11:86234000-86236200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:86234000-86236400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr11:86234000-86236400	Enhancers	HSMM	muscle
14	chr11:86234200-86236000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:86234200-86236000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr11:86234200-86236200	Enhancers	Fetal Lung	lung
17	chr11:86234200-86236200	Enhancers	HMEC	breast
18	chr11:86234200-86236200	Enhancers	HSMMtube	muscle
19	chr11:86234200-86236600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:86234400-86236200	Enhancers	Fetal Stomach	stomach
21	chr11:86234400-86236200	Enhancers	NHLF	lung
22	chr11:86234400-86236400	Enhancers	HepG2	liver
23	chr11:86234600-86235800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:86234600-86235800	Enhancers	Adipose Nuclei	Adipose
25	chr11:86234600-86236000	Enhancers	Stomach Mucosa	stomach
26	chr11:86234600-86236200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:86234600-86236200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:86234600-86236200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:86234800-86235800	Enhancers	K562	blood
30	chr11:86234800-86236000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr11:86234800-86236200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr11:86235000-86235800	Enhancers	Liver	Liver
33	chr11:86235000-86235800	Enhancers	Fetal Intestine Small	intestine
34	chr11:86235000-86236000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr11:86235000-86236000	Enhancers	Colon Smooth Muscle	Colon
36	chr11:86235000-86236000	Enhancers	Fetal Muscle Leg	muscle
37	chr11:86235000-86236000	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr11:86235000-86236200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:86235000-86236200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:86235000-86236200	Enhancers	Placenta	Placenta
41	chr11:86235000-86236200	Enhancers	Stomach Smooth Muscle	stomach
42	chr11:86235200-86236000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr11:86235200-86236000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:86235200-86236000	Enhancers	Ovary	ovary
45	chr11:86235200-86236200	Enhancers	Fetal Intestine Large	intestine
46	chr11:86235200-86236200	Enhancers	Fetal Kidney	kidney
47	chr11:86235400-86235800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:86235400-86235800	Weak transcription	Small Intestine	intestine
49	chr11:86235400-86236000	Flanking Active TSS	NHEK	skin
50	chr11:86235400-86236200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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