Variant report

Variant	rs636434
Chromosome Location	chr6:65961810-65961811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12198932	0.82[ASN][1000 genomes]
rs1321932	0.82[ASN][1000 genomes]
rs1853165	0.82[ASN][1000 genomes]
rs2639695	0.84[AFR][1000 genomes]
rs2639696	0.84[AFR][1000 genomes]
rs2788907	0.84[AFR][1000 genomes]
rs2788908	0.84[AFR][1000 genomes]
rs475994	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs494707	0.84[AFR][1000 genomes]
rs496597	0.80[AFR][1000 genomes]
rs496599	0.80[AFR][1000 genomes]
rs523089	0.83[AFR][1000 genomes]
rs535087	0.88[ASN][1000 genomes]
rs536372	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs593403	0.80[AFR][1000 genomes]
rs593740	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs604291	0.80[AFR][1000 genomes]
rs621362	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs624378	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6455028	0.82[ASN][1000 genomes]
rs6909284	0.82[ASN][1000 genomes]
rs697304	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs841529	0.86[ASN][1000 genomes]
rs841530	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886010	chr6:65873577-65989292	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv521670	chr6:65921933-66009103	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1026975	chr6:65927058-65979662	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65961600-65962000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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