Variant report

Variant	rs637031
Chromosome Location	chr15:46007364-46007365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:46006790..46007374-chr15:46082648..46083178,2	MCF-7	breast:
2	chr15:45997687..45998467-chr15:46006520..46007480,3	MCF-7	breast:
3	chr15:46006164..46008790-chr15:46082417..46084060,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11070469	0.90[ASN][1000 genomes]
rs11070470	0.84[ASN][1000 genomes]
rs11852275	0.91[ASN][1000 genomes]
rs11857167	0.91[ASN][1000 genomes]
rs12148892	0.90[ASN][1000 genomes]
rs12592328	0.91[ASN][1000 genomes]
rs56747825	0.89[ASN][1000 genomes]
rs56787282	0.90[ASN][1000 genomes]
rs609803	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61350101	0.99[ASN][1000 genomes]
rs651990	0.84[ASN][1000 genomes]
rs655385	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74012915	0.90[ASN][1000 genomes]
rs7496296	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:46003200-46011600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:46003200-46011800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:46006600-46007400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:46006600-46007400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:46006600-46007600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:46006600-46007600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:46006600-46007600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:46006600-46007800	Enhancers	NHLF	lung
9	chr15:46006600-46008400	Enhancers	Rectal Smooth Muscle	rectum
10	chr15:46006800-46007400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
11	chr15:46006800-46007600	Enhancers	HUVEC	blood vessel
12	chr15:46006800-46007600	Enhancers	K562	blood
13	chr15:46007000-46007400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:46007000-46007400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:46007000-46007400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:46007000-46007400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:46007000-46007400	Enhancers	Fetal Brain Female	brain
18	chr15:46007000-46007400	Enhancers	Fetal Lung	lung
19	chr15:46007000-46007400	Enhancers	NHEK	skin
20	chr15:46007000-46008200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:46007200-46007400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr15:46007200-46007400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:46007200-46007400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:46007200-46007400	Enhancers	Colon Smooth Muscle	Colon
25	chr15:46007200-46007400	Enhancers	Stomach Smooth Muscle	stomach
26	chr15:46007200-46007600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
27	chr15:46007200-46007600	Enhancers	Fetal Brain Male	brain
28	chr15:46007200-46007600	Enhancers	NHDF-Ad	bronchial
29	chr15:46007200-46007600	Enhancers	Osteobl	bone
30	chr15:46007200-46011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:46007200-46016400	Weak transcription	Gastric	stomach

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