Variant report

Variant	rs637135
Chromosome Location	chr6:33677225-33677226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33673686..33677249-chr6:33690275..33693823,3	K562	blood:
2	chr6:33676238..33679184-chr6:33722714..33724604,2	MCF-7	breast:
3	chr6:33395342..33398838-chr6:33677022..33679442,4	K562	blood:
4	chr6:33587667..33592228-chr6:33677016..33679936,5	MCF-7	breast:
5	chr6:33555432..33562879-chr6:33670455..33680174,12	K562	blood:
6	chr6:33677052..33678604-chr6:34122828..34124549,2	MCF-7	breast:
7	chr6:33554633..33558061-chr6:33675915..33678804,3	MCF-7	breast:
8	chr6:33545816..33547496-chr6:33675270..33677360,2	K562	blood:
9	chr6:33660515..33666072-chr6:33673200..33680629,8	MCF-7	breast:
10	chr6:33586029..33588725-chr6:33677027..33679418,2	MCF-7	breast:
11	chr6:33551901..33555908-chr6:33676752..33679381,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197251	Chromatin interaction
ENSG00000266509	Chromatin interaction
ENSG00000124493	Chromatin interaction
ENSG00000269490	Chromatin interaction
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs523076	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs559290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62398913	0.91[EUR][1000 genomes]
rs649775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653825	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880503	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33663000-33678200	Weak transcription	Fetal Kidney	kidney
2	chr6:33663800-33678600	Weak transcription	Small Intestine	intestine
3	chr6:33664600-33678000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:33665200-33678000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:33665200-33678200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:33665200-33678600	Weak transcription	Aorta	Aorta
7	chr6:33665400-33677800	Weak transcription	Stomach Mucosa	stomach
8	chr6:33665600-33678200	Weak transcription	NH-A	brain
9	chr6:33665600-33678400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:33666000-33677800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:33666000-33678200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:33666200-33677600	Weak transcription	Psoas Muscle	Psoas
13	chr6:33666400-33677800	Weak transcription	Brain Anterior Caudate	brain
14	chr6:33666600-33677800	Weak transcription	Right Atrium	heart
15	chr6:33666600-33678200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:33666600-33678400	Weak transcription	Colonic Mucosa	Colon
17	chr6:33666600-33678400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:33667000-33678400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:33668400-33677800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33668600-33677800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:33668600-33677800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:33668600-33678000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:33668600-33678200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:33668600-33678200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:33669200-33677800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:33670400-33677800	Weak transcription	HSMMtube	muscle
27	chr6:33670400-33678000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:33670800-33678200	Weak transcription	NHDF-Ad	bronchial
29	chr6:33671400-33677800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:33672000-33677400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:33672200-33677600	Strong transcription	Thymus	Thymus
32	chr6:33672600-33678000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:33673800-33678000	Strong transcription	Fetal Stomach	stomach
34	chr6:33673800-33678400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:33674200-33678400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr6:33674400-33677600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:33674400-33677800	Strong transcription	Fetal Intestine Large	intestine
38	chr6:33674400-33678200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:33674400-33678200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:33674400-33678200	Strong transcription	Fetal Intestine Small	intestine
41	chr6:33674600-33677600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:33674600-33678200	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:33674600-33678200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:33674600-33678400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:33674800-33677400	Strong transcription	Osteobl	bone
46	chr6:33674800-33678400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:33675000-33677400	Strong transcription	Placenta	Placenta
48	chr6:33675000-33677400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:33675000-33677600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:33675000-33677600	Strong transcription	K562	blood

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