Variant report

Variant	rs639123
Chromosome Location	chr15:40767914-40767915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16970734	0.85[ASN][1000 genomes]
rs582736	0.82[ASN][1000 genomes]
rs589650	0.85[ASN][1000 genomes]
rs607118	0.89[ASN][1000 genomes]
rs611933	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs617031	0.85[ASN][1000 genomes]
rs623187	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs624486	0.87[ASN][1000 genomes]
rs640919	0.85[ASN][1000 genomes]
rs667623	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40763000-40770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:40764600-40768200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:40764600-40769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:40764600-40770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:40764600-40770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:40764600-40771400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:40764800-40770000	Weak transcription	NHEK	skin
8	chr15:40765000-40769800	Weak transcription	Hela-S3	cervix
9	chr15:40765000-40772400	Weak transcription	Esophagus	oesophagus
10	chr15:40765000-40773400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:40765200-40768400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:40765200-40770200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:40765200-40770800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:40765600-40768400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:40766600-40770000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:40766800-40769800	Weak transcription	K562	blood
17	chr15:40767200-40769000	Weak transcription	Fetal Stomach	stomach
18	chr15:40767400-40769800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:40767600-40771400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links