Variant report

Variant	rs582736
Chromosome Location	chr15:40764549-40764550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
2	chr15:40763768..40766540-chr15:40784281..40786409,2	K562	blood:
3	chr15:40761789..40767637-chr15:40797359..40801640,7	K562	blood:
4	chr15:40721609..40724539-chr15:40764189..40766844,2	K562	blood:
5	chr15:40763301..40766173-chr15:40861522..40864181,2	K562	blood:
6	chr15:40731823..40734826-chr15:40760868..40766207,7	K562	blood:
7	chr15:40763466..40765784-chr15:40773295..40775990,2	MCF-7	breast:
8	chr15:40749483..40752811-chr15:40761476..40764713,3	MCF-7	breast:
9	chr15:40721609..40723938-chr15:40763922..40765689,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000244251	Chromatin interaction
ENSG00000259536	Chromatin interaction
ENSG00000140320	Chromatin interaction
ENSG00000166133	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10444792	0.84[EUR][1000 genomes]
rs10518696	0.86[CEU][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs11070276	0.87[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs11070278	0.84[EUR][1000 genomes]
rs11632319	0.85[CEU][hapmap]
rs12442697	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs12916218	0.87[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1530942	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1530943	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs16970734	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16970854	0.87[CEU][hapmap]
rs1869303	0.87[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2014367	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2278887	0.87[GIH][hapmap]
rs2278889	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2290379	0.87[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs2412528	0.84[EUR][1000 genomes]
rs2412530	0.87[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs2924389	0.87[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2959535	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2959547	0.86[EUR][1000 genomes]
rs3803354	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs4923873	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4923877	0.87[CEU][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap]
rs4923878	0.87[CEU][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap]
rs4923879	0.87[CEU][hapmap]
rs4924473	0.86[EUR][1000 genomes]
rs4924474	0.86[EUR][1000 genomes]
rs4924476	0.86[EUR][1000 genomes]
rs4924482	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs4924483	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs589650	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs607118	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611933	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs617031	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs623187	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs624486	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs639123	0.82[ASN][1000 genomes]
rs640919	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6492955	0.87[CEU][hapmap]
rs651131	0.90[EUR][1000 genomes]
rs667623	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164166	0.87[CEU][hapmap]
rs7167922	0.87[CEU][hapmap]
rs7168927	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8024579	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs8024802	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs8029208	0.84[EUR][1000 genomes]
rs8032453	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs8033739	0.86[EUR][1000 genomes]
rs8034726	0.87[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs8040187	0.87[CEU][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs8041816	0.87[CEU][hapmap]
rs8041991	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs8043197	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs896797	0.87[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs921624	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs9284288	0.86[EUR][1000 genomes]
rs976402	0.87[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs9783737	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3373294	chr15:40762085-40765033	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs582736	C15orf57	cis	parietal	SCAN
rs582736	CHP	cis	parietal	SCAN
rs582736	RPUSD2	cis	parietal	SCAN
rs582736	C15orf57	cis	cerebellum	SCAN
rs582736	C15orf56	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40762600-40764600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:40762600-40764600	Active TSS	Fetal Brain Female	brain
3	chr15:40762800-40764600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:40763000-40764600	Active TSS	Rectal Smooth Muscle	rectum
5	chr15:40763000-40770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:40763400-40764800	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr15:40763600-40764600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:40763600-40764600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr15:40763600-40764600	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr15:40763600-40764600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:40763600-40764600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:40763600-40764600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:40763600-40764600	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr15:40763600-40764600	Flanking Active TSS	Colonic Mucosa	Colon
15	chr15:40763600-40764600	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr15:40763600-40764600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:40763600-40764600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr15:40763600-40764600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr15:40763600-40764600	Flanking Active TSS	Dnd41	blood
20	chr15:40763600-40764600	Flanking Active TSS	NHEK	skin
21	chr15:40763600-40764800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:40763600-40764800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:40763600-40764800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr15:40763800-40764600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:40763800-40764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr15:40763800-40764600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:40763800-40764600	Flanking Active TSS	Primary B cells from peripheral blood	blood
28	chr15:40763800-40764600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:40763800-40764600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:40763800-40764600	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr15:40763800-40764600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr15:40763800-40764600	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr15:40763800-40764600	Flanking Active TSS	HSMM	muscle
34	chr15:40763800-40764600	Flanking Active TSS	HUVEC	blood vessel
35	chr15:40763800-40764600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr15:40763800-40764800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr15:40763800-40764800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr15:40763800-40764800	Flanking Active TSS	Fetal Muscle Leg	muscle
39	chr15:40764000-40764600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr15:40764000-40764600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr15:40764000-40764600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:40764000-40764600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:40764000-40764600	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr15:40764000-40764600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:40764000-40764600	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr15:40764000-40764600	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr15:40764000-40764600	Flanking Active TSS	Fetal Lung	lung
48	chr15:40764000-40764600	Flanking Active TSS	Thymus	Thymus
49	chr15:40764000-40764600	Flanking Active TSS	HSMMtube	muscle
50	chr15:40764000-40764600	Flanking Active TSS	NHLF	lung

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