Variant report

Variant	rs4923873
Chromosome Location	chr15:40784859-40784860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40763768..40766540-chr15:40784281..40786409,2	K562	blood:
2	chr15:40782898..40785879-chr15:40789263..40792027,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10444792	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10518696	0.87[EUR][1000 genomes]
rs10851397	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11070276	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070278	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11632319	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12442697	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12916218	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1530942	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1530943	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16970734	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16970854	0.87[EUR][1000 genomes]
rs1869303	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1987795	0.85[AMR][1000 genomes]
rs2014367	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2034653	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2084941	0.83[EUR][1000 genomes]
rs2278889	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2290379	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2412528	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2412530	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2412533	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2924389	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2959535	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2959547	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3803354	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4467046	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4561439	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4923877	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4923878	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4923879	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4924473	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924474	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924476	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4924482	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924483	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57140606	0.87[EUR][1000 genomes]
rs57736474	0.85[EUR][1000 genomes]
rs582736	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs589650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs607118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs611933	0.85[EUR][1000 genomes]
rs617031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs623187	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs624486	0.86[EUR][1000 genomes]
rs640919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6492952	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6492953	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6492955	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs651131	0.82[EUR][1000 genomes]
rs667623	0.82[EUR][1000 genomes]
rs7163648	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7163889	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7164056	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7164166	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7164405	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7167239	0.83[EUR][1000 genomes]
rs7167922	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7168913	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7168927	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7170073	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7170327	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7170946	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73396510	0.85[EUR][1000 genomes]
rs73396515	0.85[EUR][1000 genomes]
rs8024579	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8024802	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8029208	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8032453	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8033739	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034726	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8038350	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8040187	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8041816	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8041991	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8043197	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs896797	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs921624	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9284288	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs976402	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9783737	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3443211	chr15:40783910-40786008	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4923873	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40784800-40785000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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