Variant report

Variant	rs7168913
Chromosome Location	chr15:40863497-40863498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128891	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10444792	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518696	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10851397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11070276	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11070278	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11070281	0.82[AFR][1000 genomes]
rs11632319	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637275	0.90[AFR][1000 genomes]
rs12442697	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12916218	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1530942	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1530943	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16970734	0.91[EUR][1000 genomes]
rs16970854	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1869303	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987795	0.82[AMR][1000 genomes]
rs2014367	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034653	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2278887	0.90[ASN][1000 genomes]
rs2278889	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2290379	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412528	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2412530	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2412533	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2924389	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2959535	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959547	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3803354	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3986349	0.81[AFR][1000 genomes]
rs4467046	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4561439	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923873	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4923877	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923878	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4924473	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924474	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924476	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924482	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4924483	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57140606	0.96[EUR][1000 genomes]
rs57736474	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58458955	0.82[EUR][1000 genomes]
rs589650	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59654927	0.82[EUR][1000 genomes]
rs607118	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61381741	0.82[EUR][1000 genomes]
rs617031	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs623187	0.91[EUR][1000 genomes]
rs624486	0.81[EUR][1000 genomes]
rs640919	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6492952	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6492953	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6492955	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7163648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7163889	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7164056	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7164166	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7164405	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167239	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7167922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168927	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7170073	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170946	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73396510	0.94[EUR][1000 genomes]
rs73396515	0.94[EUR][1000 genomes]
rs8024579	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8024802	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029208	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8032453	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8033739	0.92[EUR][1000 genomes]
rs8034726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8038350	0.86[EUR][1000 genomes]
rs8040187	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8041816	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8041991	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8043197	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs896797	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs921624	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9284288	0.92[EUR][1000 genomes]
rs976402	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9783737	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7168913	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40862400-40863600	Weak transcription	Gastric	stomach
2	chr15:40862400-40863800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:40862400-40863800	Weak transcription	Placenta	Placenta
4	chr15:40862400-40863800	Weak transcription	Lung	lung
5	chr15:40862400-40865600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:40862400-40865600	Weak transcription	Esophagus	oesophagus
7	chr15:40862600-40863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:40862600-40863800	Weak transcription	Pancreas	Pancrea
9	chr15:40862600-40864000	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr15:40862600-40864000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:40862600-40864000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr15:40862600-40865600	Weak transcription	Left Ventricle	heart
13	chr15:40862800-40863600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:40862800-40863600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:40862800-40863600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:40862800-40863600	Weak transcription	Ovary	ovary
17	chr15:40862800-40863800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:40862800-40863800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:40862800-40863800	Weak transcription	Thymus	Thymus
20	chr15:40862800-40864800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:40862800-40867000	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:40862800-40875200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:40863000-40863600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:40863000-40863600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:40863000-40863600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:40863000-40863600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:40863000-40863600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:40863000-40863600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr15:40863000-40863600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:40863000-40863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:40863000-40863600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr15:40863000-40863600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:40863000-40863600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:40863000-40863600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:40863000-40863600	Weak transcription	Adipose Nuclei	Adipose
36	chr15:40863000-40863600	Weak transcription	Brain Anterior Caudate	brain
37	chr15:40863000-40863600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:40863000-40863600	Weak transcription	Fetal Kidney	kidney
39	chr15:40863000-40863600	Enhancers	HepG2	liver
40	chr15:40863000-40863600	Weak transcription	NHDF-Ad	bronchial
41	chr15:40863000-40863800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:40863000-40863800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:40863000-40863800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:40863000-40863800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:40863000-40863800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr15:40863000-40863800	Weak transcription	Brain Germinal Matrix	brain
47	chr15:40863000-40863800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:40863000-40863800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:40863000-40863800	Weak transcription	Fetal Intestine Small	intestine
50	chr15:40863000-40863800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links