Variant report

Variant	rs11070281
Chromosome Location	chr15:40869377-40869378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40867638..40870164-chr15:40881425..40883040,2	K562	blood:
2	chr15:40867311..40870142-chr15:40875469..40877107,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10851397	0.88[AFR][1000 genomes]
rs11637275	0.92[AFR][1000 genomes]
rs3986349	0.83[AFR][1000 genomes]
rs4923878	0.81[AFR][1000 genomes]
rs4923879	0.87[AFR][1000 genomes]
rs6492955	0.87[AFR][1000 genomes]
rs7163648	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7167922	0.82[AFR][1000 genomes]
rs7168913	0.82[AFR][1000 genomes]
rs7170073	0.81[AFR][1000 genomes]
rs7170327	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11070281	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40862800-40875200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:40863000-40870200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:40863000-40875000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:40863000-40875000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:40865800-40875000	Weak transcription	Fetal Lung	lung
6	chr15:40866000-40870000	Weak transcription	NH-A	brain
7	chr15:40866000-40874800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:40866400-40874800	Weak transcription	Colonic Mucosa	Colon
9	chr15:40866400-40876600	Weak transcription	HSMMtube	muscle
10	chr15:40866400-40878200	Weak transcription	Brain Angular Gyrus	brain
11	chr15:40866600-40869600	Weak transcription	Fetal Stomach	stomach
12	chr15:40866600-40870000	Weak transcription	Gastric	stomach
13	chr15:40866600-40870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:40866600-40870600	Weak transcription	Esophagus	oesophagus
15	chr15:40866600-40871400	Weak transcription	Thymus	Thymus
16	chr15:40866600-40873600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:40866600-40873800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:40866600-40873800	Weak transcription	Fetal Intestine Small	intestine
19	chr15:40866600-40874600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:40866600-40874800	Weak transcription	Pancreas	Pancrea
21	chr15:40866600-40874800	Weak transcription	A549	lung
22	chr15:40866600-40875000	Weak transcription	Lung	lung
23	chr15:40866600-40875000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:40866600-40875200	Weak transcription	Spleen	Spleen
25	chr15:40866600-40875200	Weak transcription	HSMM	muscle
26	chr15:40866600-40881800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:40866600-40881800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:40866600-40881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:40866800-40870000	Weak transcription	HUVEC	blood vessel
30	chr15:40866800-40871000	Weak transcription	HepG2	liver
31	chr15:40866800-40874800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:40866800-40875200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:40866800-40875200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:40866800-40875200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:40867000-40870000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:40867000-40870800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:40867000-40874800	Weak transcription	Osteobl	bone
38	chr15:40867000-40875200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr15:40867200-40869400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:40867200-40869400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:40867200-40869600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:40867200-40869800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:40867200-40870200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:40867200-40871600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:40867200-40872000	Weak transcription	Fetal Brain Female	brain
46	chr15:40867200-40872400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:40867200-40874800	Weak transcription	Brain Anterior Caudate	brain
48	chr15:40867200-40874800	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:40867200-40875000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:40867200-40875000	Weak transcription	Primary B cells from cord blood	blood

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