Variant report

Variant	rs4923878
Chromosome Location	chr15:40861085-40861086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr15:40861041-40862026	Hela-S3	cervix:	n/a	n/a
2	MXI1	chr15:40860597-40862522	SK-N-SH	brain:	n/a	n/a
3	MAX	chr15:40860862-40861123	K562	blood:	n/a	n/a
4	MTA3	chr15:40860783-40861623	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:40861058-40861834	K562	blood:	n/a	n/a
6	CBX3	chr15:40861073-40861704	K562	blood:	n/a	n/a
7	CREB1	chr15:40861069-40862121	K562	blood:	n/a	chr15:40861485-40861498
8	POLR2A	chr15:40861032-40862220	HUVEC	blood vessel:	n/a	n/a
9	PML	chr15:40861074-40861801	K562	blood:	n/a	n/a
10	MXI1	chr15:40860999-40862622	IMR90	lung:	n/a	n/a
11	GATA1	chr15:40861001-40862060	PBDE	blood:	n/a	n/a
12	MYC	chr15:40860995-40862198	K562	blood:	n/a	n/a
13	POLR2A	chr15:40860888-40862953	PFSK-1	brain:	n/a	n/a
14	NFIC	chr15:40861083-40861974	GM12878	blood:	n/a	n/a
15	SP1	chr15:40861064-40861940	HCT-116	colon:	n/a	chr15:40861445-40861454
16	POLR2A	chr15:40860911-40863037	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr15:40861059-40861813	SK-N-SH	brain:	n/a	n/a
18	POLR2A	chr15:40861023-40862078	PFSK-1	brain:	n/a	n/a
19	RFX5	chr15:40861067-40861931	Hela-S3	cervix:	n/a	n/a
20	SIN3AK20	chr15:40861078-40862212	MCF-7	breast:	n/a	n/a
21	CREB1	chr15:40861056-40862022	H1-hESC	embryonic stem cell:	n/a	chr15:40861485-40861498
22	USF2	chr15:40860958-40861632	Hela-S3	cervix:	n/a	n/a
23	MTA3	chr15:40861079-40862154	GM12878	blood:	n/a	n/a
24	POLR2A	chr15:40860996-40861977	U87	brain:	n/a	n/a
25	HCFC1	chr15:40860574-40863139	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr15:40860936-40861978	PBDE	blood:	n/a	n/a
27	MAX	chr15:40860950-40862279	NB4	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:
2	chr15:40861014..40861649-chr15:40886152..40886686,2	Hela-S3	cervix:
3	chr15:40860821..40863087-chr15:40987318..40989233,3	K562	blood:

No data

Variant related genes	Relation type
C15orf57	TF binding region
RPUSD2	TF binding region
ENSG00000137812	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000128891	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10444792	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518696	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10851397	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070276	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11070278	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070281	0.81[AFR][1000 genomes]
rs11632319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637275	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12442697	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12916218	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1453182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530942	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1530943	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16970734	0.91[EUR][1000 genomes]
rs16970854	1.00[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1801320	1.00[CEU][hapmap]
rs1869303	1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1987795	0.85[AMR][1000 genomes]
rs2014367	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2034653	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2278887	0.88[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2278889	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290379	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2304579	1.00[CEU][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap]
rs2412528	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2412530	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2412533	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2924389	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959535	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2959547	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3803354	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3986349	0.80[AFR][1000 genomes]
rs4467046	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4561439	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4923873	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4923877	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923879	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4924473	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924474	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924476	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924482	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57140606	0.96[EUR][1000 genomes]
rs57736474	0.94[EUR][1000 genomes]
rs582736	0.87[CEU][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap]
rs58458955	0.82[EUR][1000 genomes]
rs589650	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59654927	0.82[EUR][1000 genomes]
rs607118	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs611933	0.87[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap]
rs61381741	0.82[EUR][1000 genomes]
rs617031	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs623187	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs624486	0.87[CEU][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs640919	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6492952	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6492953	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6492955	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs667623	0.88[GIH][hapmap];0.86[TSI][hapmap]
rs7163648	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163889	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7164056	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7164166	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7164405	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167239	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7167922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7168913	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7168927	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7170073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170327	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7170946	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73396510	0.94[EUR][1000 genomes]
rs73396515	0.94[EUR][1000 genomes]
rs8024579	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8024802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029208	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8032453	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8033739	0.92[EUR][1000 genomes]
rs8034726	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8038350	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs8040187	1.00[CEU][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8041816	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8041991	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043197	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs896797	0.87[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921624	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9284288	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs976402	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9783737	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4923878	MRPL42P5	cis	multi-tissue	Pritchard
rs4923878	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40857200-40861200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:40857800-40861200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:40857800-40861200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:40858000-40861200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:40858000-40861200	Weak transcription	Lung	lung
6	chr15:40858000-40861200	Weak transcription	Pancreas	Pancrea
7	chr15:40858000-40861400	Weak transcription	Spleen	Spleen
8	chr15:40860600-40861200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:40860600-40861200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:40860600-40861200	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr15:40860600-40861200	Flanking Active TSS	Hela-S3	cervix
12	chr15:40860600-40862200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:40860800-40861200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:40860800-40861200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:40860800-40861200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:40860800-40861200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr15:40860800-40861200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr15:40860800-40861200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:40860800-40861200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:40860800-40861200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr15:40860800-40861200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr15:40860800-40861200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr15:40860800-40861200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr15:40860800-40861200	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr15:40860800-40861200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr15:40860800-40861200	Enhancers	Fetal Heart	heart
27	chr15:40860800-40861200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr15:40860800-40861200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr15:40860800-40861200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr15:40860800-40861200	Enhancers	Stomach Mucosa	stomach
31	chr15:40860800-40861200	Flanking Active TSS	GM12878-XiMat	blood
32	chr15:40860800-40861400	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr15:40860800-40861400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr15:40860800-40861400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr15:40860800-40861400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:40860800-40861400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:40860800-40861400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:40860800-40861400	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr15:40860800-40861400	Flanking Active TSS	Dnd41	blood
40	chr15:40860800-40861400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr15:40860800-40861600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:40860800-40862200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:40860800-40862200	Active TSS	Colonic Mucosa	Colon
44	chr15:40860800-40862200	Active TSS	Fetal Brain Female	brain
45	chr15:40860800-40862200	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr15:40860800-40862400	Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr15:40860800-40862400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:40860800-40862600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:40860800-40863200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:40861000-40861200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links