Variant report

Variant	rs57736474
Chromosome Location	chr15:40966016-40966017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10444792	0.89[EUR][1000 genomes]
rs10518696	0.98[EUR][1000 genomes]
rs10851397	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11070276	0.87[EUR][1000 genomes]
rs11070278	0.89[EUR][1000 genomes]
rs11632319	0.94[EUR][1000 genomes]
rs12442697	0.90[EUR][1000 genomes]
rs12916218	0.87[EUR][1000 genomes]
rs1530942	0.89[EUR][1000 genomes]
rs1530943	0.89[EUR][1000 genomes]
rs16970734	0.85[EUR][1000 genomes]
rs16970854	0.98[EUR][1000 genomes]
rs1801320	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1869303	0.87[EUR][1000 genomes]
rs2014367	0.87[EUR][1000 genomes]
rs2034653	0.84[EUR][1000 genomes]
rs2278889	0.89[EUR][1000 genomes]
rs2290379	0.84[EUR][1000 genomes]
rs2304579	0.81[EUR][1000 genomes]
rs2412528	0.85[EUR][1000 genomes]
rs2412530	0.89[EUR][1000 genomes]
rs2924389	0.87[EUR][1000 genomes]
rs2959535	0.89[EUR][1000 genomes]
rs2959547	0.87[EUR][1000 genomes]
rs34845954	0.80[AFR][1000 genomes]
rs3803354	0.90[EUR][1000 genomes]
rs4144242	0.82[AMR][1000 genomes]
rs4467046	0.94[EUR][1000 genomes]
rs45504895	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs45559631	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4561439	0.94[EUR][1000 genomes]
rs4923873	0.85[EUR][1000 genomes]
rs4923877	0.94[EUR][1000 genomes]
rs4923878	0.94[EUR][1000 genomes]
rs4923879	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4924473	0.87[EUR][1000 genomes]
rs4924474	0.87[EUR][1000 genomes]
rs4924476	0.87[EUR][1000 genomes]
rs4924482	0.89[EUR][1000 genomes]
rs4924483	0.90[EUR][1000 genomes]
rs5030786	0.81[EUR][1000 genomes]
rs57140606	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57936990	0.81[EUR][1000 genomes]
rs58458955	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs589650	0.87[EUR][1000 genomes]
rs59654927	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60408076	0.81[EUR][1000 genomes]
rs607118	0.87[EUR][1000 genomes]
rs61381741	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs617031	0.87[EUR][1000 genomes]
rs623187	0.85[EUR][1000 genomes]
rs640919	0.87[EUR][1000 genomes]
rs6492952	0.81[EUR][1000 genomes]
rs6492953	0.92[EUR][1000 genomes]
rs6492955	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7163648	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7163889	0.94[EUR][1000 genomes]
rs7164056	0.94[EUR][1000 genomes]
rs7164166	0.84[EUR][1000 genomes]
rs7164405	0.94[EUR][1000 genomes]
rs7167239	0.86[EUR][1000 genomes]
rs7167922	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7168913	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7168927	0.87[EUR][1000 genomes]
rs7170073	0.94[EUR][1000 genomes]
rs7170327	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7170946	0.94[EUR][1000 genomes]
rs7182530	0.80[AFR][1000 genomes]
rs73396510	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73396515	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8024579	0.90[EUR][1000 genomes]
rs8024802	0.90[EUR][1000 genomes]
rs8029208	0.89[EUR][1000 genomes]
rs8032453	0.87[EUR][1000 genomes]
rs8033739	0.87[EUR][1000 genomes]
rs8034726	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8038350	0.81[EUR][1000 genomes]
rs8040187	0.87[EUR][1000 genomes]
rs8041816	0.82[EUR][1000 genomes]
rs8041991	0.89[EUR][1000 genomes]
rs8043197	0.87[EUR][1000 genomes]
rs896797	0.89[EUR][1000 genomes]
rs921624	0.89[EUR][1000 genomes]
rs9284288	0.87[EUR][1000 genomes]
rs976402	0.87[EUR][1000 genomes]
rs9783737	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1841263	chr15:40902453-40966765	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv904099	chr15:40949526-41041875	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv529030	chr15:40956471-41012695	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv904100	chr15:40959624-40994706	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40913800-40986000	Weak transcription	A549	lung
2	chr15:40943000-40971400	Weak transcription	Primary B cells from cord blood	blood
3	chr15:40945000-40984200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:40950000-40981200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:40955200-40976600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:40955200-40983200	Weak transcription	Fetal Intestine Small	intestine
7	chr15:40955800-40976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:40956800-40971200	Weak transcription	Dnd41	blood
9	chr15:40958400-40966600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:40958600-40981000	Weak transcription	Thymus	Thymus
11	chr15:40960400-40977000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links