Variant report

Variant	rs8024802
Chromosome Location	chr15:40857616-40857617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZMIZ1	chr15:40857060-40857755	K562	blood:	n/a	n/a
2	JUN	chr15:40856508-40858049	K562	blood:	n/a	n/a
3	TAF1	chr15:40856879-40857656	H1-hESC	embryonic stem cell:	n/a	n/a
4	EP300	chr15:40857331-40857722	GM12878	blood:	n/a	n/a
5	RUNX3	chr15:40857022-40857680	GM12878	blood:	n/a	n/a
6	USF1	chr15:40856983-40857752	SK-N-SH	brain:	n/a	chr15:40857403-40857412 chr15:40857403-40857412 chr15:40857397-40857418 chr15:40857404-40857413 chr15:40857402-40857411
7	MAFK	chr15:40856743-40857640	Hela-S3	cervix:	n/a	n/a
8	ZC3H11A	chr15:40857307-40857640	K562	blood:	n/a	n/a
9	ZNF143	chr15:40857010-40857621	GM12878	blood:	n/a	n/a
10	MAX	chr15:40856778-40857709	HepG2	liver:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
11	ELK1	chr15:40856652-40857701	GM12878	blood:	n/a	chr15:40856847-40856856 chr15:40856847-40856856
12	MAX	chr15:40856702-40857619	SK-N-SH	brain:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
13	POLR2A	chr15:40856744-40857653	Raji	blood:	n/a	n/a
14	NFYA	chr15:40857093-40857661	Hela-S3	cervix:	n/a	chr15:40857311-40857323 chr15:40857307-40857322 chr15:40857303-40857321 chr15:40857307-40857322
15	MXI1	chr15:40856367-40857750	IMR90	lung:	n/a	n/a
16	USF1	chr15:40857090-40857617	SK-N-SH_RA	brain:	n/a	chr15:40857403-40857412 chr15:40857403-40857412 chr15:40857397-40857418 chr15:40857404-40857413 chr15:40857402-40857411
17	POLR2A	chr15:40856836-40857617	MCF-7	breast:	n/a	n/a
18	MAX	chr15:40856991-40857792	A549	lung:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
19	ZNF143	chr15:40857247-40857690	K562	blood:	n/a	n/a
20	TEAD4	chr15:40856605-40857777	K562	blood:	n/a	n/a
21	MAX	chr15:40857006-40857691	GM12878	blood:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
22	MAZ	chr15:40856423-40857893	IMR90	lung:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
23	IRF3	chr15:40857154-40857660	Hela-S3	cervix:	n/a	n/a
24	USF1	chr15:40857090-40857692	ECC-1	luminal epithelium:	n/a	chr15:40857403-40857412 chr15:40857403-40857412 chr15:40857397-40857418 chr15:40857404-40857413 chr15:40857402-40857411
25	TBL1XR1	chr15:40856994-40857859	K562	blood:	n/a	n/a
26	CREB1	chr15:40856690-40857659	HepG2	liver:	n/a	n/a
27	SMC3	chr15:40856562-40857788	Hela-S3	cervix:	n/a	n/a
28	CUX1	chr15:40857435-40857716	K562	blood:	n/a	n/a
29	EP300	chr15:40856998-40857669	GM12878	blood:	n/a	n/a
30	USF1	chr15:40857001-40857732	ECC-1	luminal epithelium:	n/a	chr15:40857403-40857412 chr15:40857403-40857412 chr15:40857397-40857418 chr15:40857404-40857413 chr15:40857402-40857411
31	POLR2A	chr15:40856436-40857676	GM12891	blood:	n/a	n/a
32	POLR2A	chr15:40856490-40857653	GM12878	blood:	n/a	n/a
33	POLR2A	chr15:40856534-40857763	PBDE	blood:	n/a	n/a
34	POLR2A	chr15:40856959-40857667	HCT-116	colon:	n/a	n/a
35	TAF1	chr15:40856691-40857664	PFSK-1	brain:	n/a	n/a
36	POLR2A	chr15:40856825-40857646	SK-N-MC	brain:	n/a	n/a
37	ELK1	chr15:40857468-40857660	K562	blood:	n/a	n/a
38	MAZ	chr15:40856653-40857747	K562	blood:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
39	MAX	chr15:40856808-40857685	ECC-1	luminal epithelium:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
40	POLR2A	chr15:40856937-40857639	ECC-1	luminal epithelium:	n/a	n/a
41	ELF1	chr15:40856516-40857768	MCF-7	breast:	n/a	n/a
42	POLR2A	chr15:40856842-40857649	K562	blood:	n/a	n/a
43	ELF1	chr15:40856576-40857805	K562	blood:	n/a	n/a
44	PML	chr15:40856489-40857716	GM12878	blood:	n/a	n/a
45	MYBL2	chr15:40856987-40857644	HepG2	liver:	n/a	n/a
46	RFX5	chr15:40857177-40857720	K562	blood:	n/a	chr15:40857383-40857397 chr15:40857247-40857260
47	MAX	chr15:40856818-40857714	HepG2	liver:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
48	ATF3	chr15:40857152-40857628	GM12878	blood:	n/a	n/a
49	TBP	chr15:40856723-40857678	Hela-S3	cervix:	n/a	n/a
50	ARID3A	chr15:40857164-40857744	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40856304..40858832-chr15:40886132..40888060,2	K562	blood:
2	chr15:40857525..40859323-chr15:40878424..40880579,2	K562	blood:
3	chr15:40854296..40857804-chr15:40884735..40887632,3	K562	blood:
4	chr15:40855952..40857673-chr15:41046204..41048687,2	K562	blood:
5	chr15:40857188..40857959-chr3:38496163..38496835,2	Hela-S3	cervix:
6	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:
7	chr15:40856363..40858923-chr15:41165345..41167356,2	K562	blood:

Variant related genes	Relation type
C15orf57	TF binding region
RPUSD2	TF binding region
ENSG00000104140	Chromatin interaction
ENSG00000137812	Chromatin interaction
ENSG00000166133	Chromatin interaction
ENSG00000137824	Chromatin interaction
ENSG00000229589	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10444792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518696	1.00[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10851397	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11070276	1.00[CEU][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11070278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637275	0.86[AFR][1000 genomes]
rs12442697	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12916218	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1530942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1530943	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16970734	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16970854	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1801320	1.00[CEU][hapmap]
rs1869303	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1987795	0.91[AMR][1000 genomes]
rs2014367	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2034653	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2084941	0.82[EUR][1000 genomes]
rs2278887	0.88[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2278889	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290379	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2304579	1.00[CEU][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs2412528	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2412530	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412533	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2924389	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959535	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3803354	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4467046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561439	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923873	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4923877	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923879	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4924473	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924482	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140606	0.92[EUR][1000 genomes]
rs57736474	0.90[EUR][1000 genomes]
rs582736	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs589650	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs607118	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs611933	0.87[CEU][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs617031	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs623187	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs624486	0.87[CEU][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs640919	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6492952	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6492953	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6492955	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs651131	0.80[EUR][1000 genomes]
rs667623	0.88[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs7163648	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7163889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7164166	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7164405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167239	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7167922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168913	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168927	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7170073	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7170327	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396510	0.90[EUR][1000 genomes]
rs73396515	0.90[EUR][1000 genomes]
rs8024579	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029208	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8032453	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033739	0.96[EUR][1000 genomes]
rs8034726	1.00[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8035774	0.81[AFR][1000 genomes]
rs8038350	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8040187	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8041816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8041991	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043197	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs896797	0.87[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921624	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9284288	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs976402	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9783737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8024802	MRPL42P5	cis	multi-tissue	Pritchard
rs8024802	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40855200-40858000	Active TSS	GM12878-XiMat	blood
2	chr15:40855800-40857800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:40855800-40857800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:40856200-40857800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:40856200-40857800	Active TSS	Colonic Mucosa	Colon
6	chr15:40856200-40857800	Active TSS	Right Ventricle	heart
7	chr15:40856200-40857800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr15:40856200-40857800	Active TSS	K562	blood
9	chr15:40856400-40857800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr15:40856400-40857800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:40856400-40857800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:40856400-40857800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr15:40856400-40857800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr15:40856400-40857800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:40856400-40857800	Active TSS	Fetal Muscle Trunk	muscle
16	chr15:40856400-40857800	Active TSS	Left Ventricle	heart
17	chr15:40856400-40857800	Active TSS	Ovary	ovary
18	chr15:40856400-40857800	Active TSS	Psoas Muscle	Psoas
19	chr15:40856400-40857800	Active TSS	Right Atrium	heart
20	chr15:40856400-40858000	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr15:40856400-40858000	Active TSS	A549	lung
22	chr15:40856600-40857800	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr15:40856600-40857800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:40856600-40857800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:40856600-40857800	Active TSS	Aorta	Aorta
26	chr15:40856600-40857800	Active TSS	Brain Angular Gyrus	brain
27	chr15:40856600-40857800	Active TSS	Brain Substantia Nigra	brain
28	chr15:40856600-40858000	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr15:40856600-40858000	Active TSS	Brain Hippocampus Middle	brain
30	chr15:40856600-40858000	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr15:40856600-40858000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:40856600-40858000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr15:40856600-40858400	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr15:40856800-40857800	Active TSS	Duodenum Mucosa	Duodenum
35	chr15:40856800-40858000	Active TSS	Brain Anterior Caudate	brain
36	chr15:40856800-40858000	Active TSS	Thymus	Thymus
37	chr15:40857200-40859200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:40857200-40861200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr15:40857400-40857800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:40857400-40857800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:40857400-40857800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr15:40857400-40857800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr15:40857400-40857800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr15:40857400-40857800	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr15:40857400-40857800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:40857400-40857800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr15:40857400-40857800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr15:40857400-40857800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:40857400-40857800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:40857400-40857800	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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