Variant report

Variant	rs8035774
Chromosome Location	chr15:40856254-40856255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40856209-40857657	GM12878	blood:	n/a	n/a
2	MAX	chr15:40856220-40856625	K562	blood:	n/a	n/a
3	MXI1	chr15:40856248-40858053	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40854296..40857804-chr15:40884735..40887632,3	K562	blood:
2	chr15:40855952..40857673-chr15:41046204..41048687,2	K562	blood:
3	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:

Variant related genes	Relation type
C15orf57	TF binding region
ENSG00000137824	Chromatin interaction
ENSG00000137812	Chromatin interaction
ENSG00000166133	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10444792	0.80[AFR][1000 genomes]
rs12442697	0.82[AFR][1000 genomes]
rs3803354	0.82[AFR][1000 genomes]
rs4467046	0.81[AFR][1000 genomes]
rs4561439	0.81[AFR][1000 genomes]
rs4923877	0.81[AFR][1000 genomes]
rs4924482	0.80[AFR][1000 genomes]
rs7163889	0.81[AFR][1000 genomes]
rs7164056	0.81[AFR][1000 genomes]
rs7170946	0.81[AFR][1000 genomes]
rs8024579	0.81[AFR][1000 genomes]
rs8024802	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
3	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:40831600-40856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:40838000-40856400	Weak transcription	A549	lung
6	chr15:40840000-40856400	Weak transcription	Fetal Brain Female	brain
7	chr15:40840000-40856600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:40843200-40856400	Weak transcription	Fetal Heart	heart
9	chr15:40843800-40856400	Weak transcription	HSMMtube	muscle
10	chr15:40846600-40856400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:40846600-40856400	Weak transcription	Right Atrium	heart
12	chr15:40846600-40856600	Weak transcription	Aorta	Aorta
13	chr15:40846600-40856600	Weak transcription	Gastric	stomach
14	chr15:40847200-40856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:40847400-40856400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:40847400-40856600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:40848000-40856400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:40848000-40856400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:40848000-40856400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:40848000-40856400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:40848400-40856400	Weak transcription	NHDF-Ad	bronchial
22	chr15:40848600-40856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:40848600-40856400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:40848600-40856400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:40848600-40856400	Weak transcription	Brain Substantia Nigra	brain
26	chr15:40848600-40856400	Weak transcription	NH-A	brain
27	chr15:40848800-40856400	Weak transcription	Brain Angular Gyrus	brain
28	chr15:40848800-40856600	Weak transcription	Lung	lung
29	chr15:40849000-40856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:40849000-40856600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:40849400-40856400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:40849600-40856400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:40850000-40856400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:40850000-40856400	Weak transcription	Fetal Kidney	kidney
35	chr15:40850200-40856400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:40851000-40856400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:40851800-40856600	Weak transcription	Esophagus	oesophagus
38	chr15:40854200-40856400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:40854400-40856400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr15:40854600-40856400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:40855000-40856400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr15:40855000-40856400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:40855200-40856400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:40855200-40856400	Enhancers	Primary B cells from cord blood	blood
45	chr15:40855200-40856400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr15:40855200-40856400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr15:40855200-40856400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:40855200-40856400	Enhancers	Adipose Nuclei	Adipose
49	chr15:40855200-40856400	Enhancers	Brain Hippocampus Middle	brain
50	chr15:40855200-40856400	Weak transcription	Fetal Stomach	stomach

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