Variant report

Variant	rs3803354
Chromosome Location	chr15:40856989-40856990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr15:40856508-40858049	K562	blood:	n/a	n/a
2	TAF1	chr15:40856879-40857656	H1-hESC	embryonic stem cell:	n/a	n/a
3	ELK4	chr15:40856646-40857383	Hela-S3	cervix:	n/a	chr15:40856846-40856857
4	HEY1	chr15:40856912-40857615	K562	blood:	n/a	n/a
5	USF1	chr15:40856983-40857752	SK-N-SH	brain:	n/a	chr15:40857403-40857412 chr15:40857403-40857412 chr15:40857397-40857418 chr15:40857404-40857413 chr15:40857402-40857411
6	POLR2A	chr15:40856378-40857440	GM12878	blood:	n/a	n/a
7	MAFK	chr15:40856743-40857640	Hela-S3	cervix:	n/a	n/a
8	NRF1	chr15:40856768-40857582	GM12878	blood:	n/a	n/a
9	STAT3	chr15:40856612-40857545	MCF10A-Er-Src	breast:	n/a	chr15:40857235-40857247 chr15:40857423-40857435 chr15:40857380-40857400
10	POLR2A	chr15:40856920-40857466	GM12891	blood:	n/a	n/a
11	MAX	chr15:40856778-40857709	HepG2	liver:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
12	ELK1	chr15:40856652-40857701	GM12878	blood:	n/a	chr15:40856847-40856856 chr15:40856847-40856856
13	MAX	chr15:40856702-40857619	SK-N-SH	brain:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
14	POLR2A	chr15:40856744-40857653	Raji	blood:	n/a	n/a
15	MXI1	chr15:40856367-40857750	IMR90	lung:	n/a	n/a
16	TAF1	chr15:40856907-40857597	K562	blood:	n/a	n/a
17	POLR2A	chr15:40856836-40857617	MCF-7	breast:	n/a	n/a
18	HMGN3	chr15:40856818-40857489	K562	blood:	n/a	n/a
19	NFYB	chr15:40856617-40857565	Hela-S3	cervix:	n/a	chr15:40857311-40857323 chr15:40857309-40857324 chr15:40857307-40857322 chr15:40857307-40857322
20	BRCA1	chr15:40856951-40857484	GM12878	blood:	n/a	n/a
21	TEAD4	chr15:40856605-40857777	K562	blood:	n/a	n/a
22	TAF1	chr15:40856967-40857375	PFSK-1	brain:	n/a	n/a
23	SP1	chr15:40856989-40857578	H1-hESC	embryonic stem cell:	n/a	chr15:40857421-40857433 chr15:40857237-40857248 chr15:40857423-40857432 chr15:40857300-40857321 chr15:40857422-40857431 chr15:40857422-40857436 chr15:40857237-40857249 chr15:40857237-40857249
24	MAZ	chr15:40856423-40857893	IMR90	lung:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
25	POLR2A	chr15:40856842-40857560	GM19099	blood:	n/a	n/a
26	MAFK	chr15:40856883-40857515	K562	blood:	n/a	n/a
27	POLR2A	chr15:40856651-40857589	GM12892	blood:	n/a	n/a
28	CREB1	chr15:40856690-40857659	HepG2	liver:	n/a	n/a
29	SMC3	chr15:40856562-40857788	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr15:40856988-40857432	K562	blood:	n/a	n/a
31	REST	chr15:40856910-40857229	K562	blood:	n/a	n/a
32	MAZ	chr15:40856742-40857615	Hela-S3	cervix:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
33	RELA	chr15:40856815-40857452	GM19099	blood:	n/a	chr15:40857018-40857027 chr15:40857018-40857027
34	YY1	chr15:40856793-40857088	GM12878	blood:	n/a	n/a
35	POLR2A	chr15:40856912-40857317	SK-N-MC	brain:	n/a	n/a
36	POLR2A	chr15:40856946-40857312	GM12891	blood:	n/a	n/a
37	POLR2A	chr15:40856436-40857676	GM12891	blood:	n/a	n/a
38	SIN3AK20	chr15:40856831-40857510	PANC-1	pancreas:	n/a	n/a
39	POLR2A	chr15:40856490-40857653	GM12878	blood:	n/a	n/a
40	GABPA	chr15:40856716-40857453	K562	blood:	n/a	n/a
41	POLR2A	chr15:40856534-40857763	PBDE	blood:	n/a	n/a
42	MAX	chr15:40856838-40857593	HepG2	liver:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
43	POLR2A	chr15:40856959-40857667	HCT-116	colon:	n/a	n/a
44	TAF1	chr15:40856691-40857664	PFSK-1	brain:	n/a	n/a
45	POLR2A	chr15:40856825-40857646	SK-N-MC	brain:	n/a	n/a
46	MAZ	chr15:40856653-40857747	K562	blood:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
47	MAX	chr15:40856808-40857685	ECC-1	luminal epithelium:	n/a	chr15:40857402-40857413 chr15:40857403-40857412
48	POLR2A	chr15:40856937-40857639	ECC-1	luminal epithelium:	n/a	n/a
49	ELF1	chr15:40856516-40857768	MCF-7	breast:	n/a	n/a
50	TCF7L2	chr15:40856854-40857471	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40856304..40858832-chr15:40886132..40888060,2	K562	blood:
2	chr11:8703863..8704578-chr15:40856398..40857346,2	Hela-S3	cervix:
3	chr10:115613765..115614569-chr15:40856774..40857392,2	NB4	blood:
4	chr12:1058395..1059394-chr15:40856943..40857497,2	Hela-S3	cervix:
5	chr15:40854296..40857804-chr15:40884735..40887632,3	K562	blood:
6	chr1:19811627..19812208-chr15:40856853..40857400,2	HCT-116	colon:
7	chr15:40855952..40857673-chr15:41046204..41048687,2	K562	blood:
8	chr15:40855657..40859262-chr15:40860971..40863634,5	MCF-7	breast:
9	chr15:40856363..40858923-chr15:41165345..41167356,2	K562	blood:
10	chr11:82782940..82783819-chr15:40856702..40857438,2	Hela-S3	cervix:

Variant related genes	Relation type
C15orf57	TF binding region
RPUSD2	TF binding region
ENSG00000196865	Chromatin interaction
ENSG00000077549	Chromatin interaction
ENSG00000198924	Chromatin interaction
ENSG00000166133	Chromatin interaction
ENSG00000246067	Chromatin interaction
ENSG00000137824	Chromatin interaction
ENSG00000137812	Chromatin interaction
ENSG00000002016	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000137502	Chromatin interaction
ENSG00000104140	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10444792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10518696	1.00[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10851397	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11070276	1.00[CEU][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11070278	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637275	0.85[AFR][1000 genomes]
rs12442697	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12916218	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1530942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1530943	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16970734	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16970854	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1801320	1.00[CEU][hapmap]
rs1869303	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1987795	0.91[AMR][1000 genomes]
rs2014367	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2034653	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2084941	0.82[EUR][1000 genomes]
rs2278887	0.88[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2278889	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290379	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2304579	1.00[CEU][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs2412528	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2412530	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412533	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2924389	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959535	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2959547	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4467046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561439	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923873	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4923877	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923878	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923879	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4924473	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4924482	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4924483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57140606	0.92[EUR][1000 genomes]
rs57736474	0.90[EUR][1000 genomes]
rs582736	0.87[CEU][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs589650	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs607118	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs611933	0.87[CEU][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs617031	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs623187	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs624486	0.87[CEU][hapmap];0.88[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs640919	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6492952	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6492953	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6492955	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs651131	0.80[EUR][1000 genomes]
rs667623	0.88[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap]
rs7163648	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7163889	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164056	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7164166	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7164405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167239	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7167922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168913	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7168927	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7170073	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7170327	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7170946	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73396510	0.90[EUR][1000 genomes]
rs73396515	0.90[EUR][1000 genomes]
rs8024579	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024802	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029208	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8032453	1.00[CEU][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033739	0.96[EUR][1000 genomes]
rs8034726	1.00[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8035774	0.82[AFR][1000 genomes]
rs8038350	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8040187	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8041816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8041991	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043197	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs896797	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921624	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9284288	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs976402	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9783737	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3803354	C15orf57	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40855200-40858000	Active TSS	GM12878-XiMat	blood
2	chr15:40855800-40857800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:40855800-40857800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:40856000-40857400	Active TSS	HMEC	breast
5	chr15:40856200-40857000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:40856200-40857000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr15:40856200-40857000	Flanking Active TSS	Dnd41	blood
8	chr15:40856200-40857400	Active TSS	HSMM	muscle
9	chr15:40856200-40857600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:40856200-40857600	Active TSS	Placenta	Placenta
11	chr15:40856200-40857600	Active TSS	NHLF	lung
12	chr15:40856200-40857800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:40856200-40857800	Active TSS	Colonic Mucosa	Colon
14	chr15:40856200-40857800	Active TSS	Right Ventricle	heart
15	chr15:40856200-40857800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr15:40856200-40857800	Active TSS	K562	blood
17	chr15:40856400-40857000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:40856400-40857000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr15:40856400-40857000	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:40856400-40857000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr15:40856400-40857000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:40856400-40857000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:40856400-40857200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr15:40856400-40857200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr15:40856400-40857400	Active TSS	Fetal Brain Male	brain
26	chr15:40856400-40857400	Active TSS	Small Intestine	intestine
27	chr15:40856400-40857600	Active TSS	H1 Cell Line	embryonic stem cell
28	chr15:40856400-40857600	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr15:40856400-40857600	Active TSS	Fetal Intestine Large	intestine
30	chr15:40856400-40857600	Active TSS	Stomach Mucosa	stomach
31	chr15:40856400-40857600	Active TSS	NHDF-Ad	bronchial
32	chr15:40856400-40857800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr15:40856400-40857800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:40856400-40857800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:40856400-40857800	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr15:40856400-40857800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr15:40856400-40857800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:40856400-40857800	Active TSS	Fetal Muscle Trunk	muscle
39	chr15:40856400-40857800	Active TSS	Left Ventricle	heart
40	chr15:40856400-40857800	Active TSS	Ovary	ovary
41	chr15:40856400-40857800	Active TSS	Psoas Muscle	Psoas
42	chr15:40856400-40857800	Active TSS	Right Atrium	heart
43	chr15:40856400-40858000	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr15:40856400-40858000	Active TSS	A549	lung
45	chr15:40856600-40857000	Bivalent/Poised TSS	HepG2	liver
46	chr15:40856600-40857200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:40856600-40857200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:40856600-40857400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:40856600-40857400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:40856600-40857400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links