Variant report

Variant	rs651131
Chromosome Location	chr15:40766647-40766648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40764613..40768482-chr15:40771207..40776375,6	K562	blood:
2	chr15:40761789..40767637-chr15:40797359..40801640,7	K562	blood:
3	chr15:40743208..40745711-chr15:40766264..40768804,2	MCF-7	breast:
4	chr15:40721609..40724539-chr15:40764189..40766844,2	K562	blood:
5	chr15:40765795..40768318-chr15:40771145..40773484,3	MCF-7	breast:
6	chr15:40757699..40759637-chr15:40765203..40767297,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259536	Chromatin interaction
ENSG00000259211	Chromatin interaction
ENSG00000244251	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10444792	0.82[EUR][1000 genomes]
rs11070276	0.84[EUR][1000 genomes]
rs11070278	0.82[EUR][1000 genomes]
rs12442697	0.80[EUR][1000 genomes]
rs12916218	0.84[EUR][1000 genomes]
rs1530942	0.82[EUR][1000 genomes]
rs1530943	0.82[EUR][1000 genomes]
rs16970734	0.85[EUR][1000 genomes]
rs1869303	0.84[EUR][1000 genomes]
rs2014367	0.80[EUR][1000 genomes]
rs2084941	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278889	0.82[EUR][1000 genomes]
rs2412528	0.82[EUR][1000 genomes]
rs2412530	0.82[EUR][1000 genomes]
rs2924389	0.80[EUR][1000 genomes]
rs2959535	0.82[EUR][1000 genomes]
rs2959547	0.84[EUR][1000 genomes]
rs3803354	0.80[EUR][1000 genomes]
rs4923873	0.82[EUR][1000 genomes]
rs4924473	0.84[EUR][1000 genomes]
rs4924474	0.84[EUR][1000 genomes]
rs4924476	0.84[EUR][1000 genomes]
rs4924482	0.82[EUR][1000 genomes]
rs4924483	0.80[EUR][1000 genomes]
rs582736	0.90[EUR][1000 genomes]
rs589650	0.84[EUR][1000 genomes]
rs607118	0.84[EUR][1000 genomes]
rs611933	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs617031	0.84[EUR][1000 genomes]
rs623187	0.85[EUR][1000 genomes]
rs624486	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs640919	0.84[EUR][1000 genomes]
rs667623	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7168927	0.84[EUR][1000 genomes]
rs8024579	0.80[EUR][1000 genomes]
rs8024802	0.80[EUR][1000 genomes]
rs8029208	0.82[EUR][1000 genomes]
rs8032453	0.80[EUR][1000 genomes]
rs8033739	0.84[EUR][1000 genomes]
rs8040187	0.84[EUR][1000 genomes]
rs8041991	0.82[EUR][1000 genomes]
rs8043197	0.84[EUR][1000 genomes]
rs896797	0.82[EUR][1000 genomes]
rs921624	0.82[EUR][1000 genomes]
rs9284288	0.84[EUR][1000 genomes]
rs976402	0.80[EUR][1000 genomes]
rs9783737	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40763000-40770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:40764600-40766800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:40764600-40766800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:40764600-40767000	Weak transcription	Fetal Intestine Small	intestine
5	chr15:40764600-40768200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:40764600-40769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:40764600-40770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:40764600-40770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:40764600-40771400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:40764800-40767000	Weak transcription	Fetal Intestine Large	intestine
11	chr15:40764800-40767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:40764800-40770000	Weak transcription	NHEK	skin
13	chr15:40765000-40767000	Weak transcription	Brain Germinal Matrix	brain
14	chr15:40765000-40767200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:40765000-40767200	Strong transcription	Fetal Stomach	stomach
16	chr15:40765000-40767600	Weak transcription	Primary T cells from cord blood	blood
17	chr15:40765000-40769800	Weak transcription	Hela-S3	cervix
18	chr15:40765000-40772400	Weak transcription	Esophagus	oesophagus
19	chr15:40765000-40773400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:40765200-40767000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:40765200-40768400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:40765200-40770200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:40765200-40770800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:40765600-40768400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:40766400-40767200	Enhancers	Fetal Muscle Leg	muscle
26	chr15:40766600-40766800	Enhancers	K562	blood
27	chr15:40766600-40770000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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