Variant report
| Variant | rs639838 |
|---|---|
| Chromosome Location | chr11:100894166-100894167 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:100893027..100895241-chr15:65587831..65589775,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000199568 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs471767 | 0.91[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs481548 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs492457 | 0.83[CEU][hapmap] |
| rs502465 | 0.82[CEU][hapmap] |
| rs503362 | 0.82[CEU][hapmap] |
| rs519792 | 0.82[CEU][hapmap] |
| rs534200 | 0.82[CEU][hapmap] |
| rs543936 | 0.83[CEU][hapmap] |
| rs545845 | 0.83[CEU][hapmap] |
| rs552916 | 0.83[CEU][hapmap] |
| rs561610 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs577615 | 0.82[CEU][hapmap] |
| rs624383 | 0.87[ASN][1000 genomes] |
| rs666207 | 0.82[CEU][hapmap] |
| rs679275 | 0.83[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048356 | chr11:100713096-101058995 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv541154 | chr11:100713096-101058995 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv976473 | chr11:100889614-100895412 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:100893800-100903200 | Weak transcription | Aorta | Aorta |
