Variant report

Variant	rs641001
Chromosome Location	chr6:164384941-164384942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164381856..164383479-chr6:164383621..164386406,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55878520	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57512711	0.80[EUR][1000 genomes]
rs593254	0.80[EUR][1000 genomes]
rs607252	0.80[EUR][1000 genomes]
rs640650	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640990	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164368800-164386400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:164380000-164393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:164380400-164386600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:164380800-164393000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:164381000-164386600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:164381400-164386600	Weak transcription	Fetal Brain Male	brain
7	chr6:164381600-164385800	Weak transcription	Brain Anterior Caudate	brain
8	chr6:164381600-164392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:164381800-164387000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:164381800-164387000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:164382000-164386400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:164382000-164387000	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:164383400-164385400	Weak transcription	Right Atrium	heart
14	chr6:164383600-164385200	Weak transcription	Right Ventricle	heart
15	chr6:164383800-164385200	Weak transcription	Left Ventricle	heart
16	chr6:164383800-164385400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:164383800-164386800	Enhancers	Colon Smooth Muscle	Colon
18	chr6:164383800-164389200	Enhancers	Brain Germinal Matrix	brain
19	chr6:164383800-164389200	Enhancers	Fetal Heart	heart
20	chr6:164384200-164385200	Enhancers	Fetal Stomach	stomach
21	chr6:164384200-164386600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:164384400-164385000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:164384400-164385200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr6:164384400-164387600	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:164384800-164385000	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:164384800-164385800	Enhancers	Psoas Muscle	Psoas
27	chr6:164384800-164386400	Weak transcription	Fetal Muscle Leg	muscle

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