Variant report

Variant	rs6415337
Chromosome Location	chr7:102064740-102064741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102057347..102059556-chr7:102063552..102065546,3	MCF-7	breast:
2	chr7:102063400..102066927-chr7:102067037..102070121,4	K562	blood:
3	chr7:102063067..102066587-chr7:102070734..102073141,4	MCF-7	breast:
4	chr7:102063275..102065714-chr7:102104868..102107184,2	MCF-7	breast:
5	chr7:102064678..102067526-chr7:102075257..102077646,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160993	Chromatin interaction
ENSG00000266715	Chromatin interaction
ENSG00000161036	Chromatin interaction
ENSG00000160991	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10226605	1.00[AMR][1000 genomes]
rs10265187	1.00[AFR][1000 genomes]
rs2141041	0.90[AFR][1000 genomes]
rs2950189	1.00[AMR][1000 genomes]
rs6465856	1.00[AFR][1000 genomes]
rs6465857	1.00[AFR][1000 genomes]
rs6465863	1.00[AFR][1000 genomes]
rs7384395	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102038000-102066800	Weak transcription	Stomach Mucosa	stomach
2	chr7:102038800-102068600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:102039200-102068200	Strong transcription	Placenta	Placenta
4	chr7:102039200-102070000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:102039600-102067800	Strong transcription	Liver	Liver
6	chr7:102039600-102068200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:102039800-102065800	Strong transcription	Adipose Nuclei	Adipose
8	chr7:102039800-102068600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:102045000-102067800	Strong transcription	HepG2	liver
10	chr7:102050800-102065000	Strong transcription	Fetal Stomach	stomach
11	chr7:102050800-102066000	Strong transcription	Fetal Intestine Small	intestine
12	chr7:102050800-102073400	Weak transcription	Psoas Muscle	Psoas
13	chr7:102051000-102065600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:102051000-102068400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:102051000-102068600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:102051200-102073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:102051400-102074400	Weak transcription	Fetal Heart	heart
18	chr7:102051600-102070000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:102053600-102073200	Weak transcription	Right Atrium	heart
20	chr7:102054000-102073400	Weak transcription	Small Intestine	intestine
21	chr7:102055200-102065600	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:102058000-102067600	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:102058400-102064800	Weak transcription	Pancreas	Pancrea
24	chr7:102058800-102068400	Strong transcription	Brain Cingulate Gyrus	brain
25	chr7:102059400-102067800	Strong transcription	Gastric	stomach
26	chr7:102059600-102065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:102061400-102064800	Weak transcription	Aorta	Aorta
28	chr7:102061400-102065200	Weak transcription	NH-A	brain
29	chr7:102061400-102065400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:102061600-102065200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:102061600-102065200	Weak transcription	Fetal Lung	lung
32	chr7:102061600-102065400	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:102061600-102065400	Weak transcription	NHLF	lung
34	chr7:102061600-102066000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:102061600-102071400	Weak transcription	Fetal Kidney	kidney
36	chr7:102061600-102072200	Weak transcription	HMEC	breast
37	chr7:102061800-102065000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:102061800-102065000	Weak transcription	Brain Substantia Nigra	brain
39	chr7:102061800-102065200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:102061800-102065200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:102061800-102065200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:102061800-102065400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:102061800-102065800	Genic enhancers	Primary B cells from peripheral blood	blood
44	chr7:102062000-102064800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr7:102062000-102064800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:102062000-102066200	Weak transcription	A549	lung
47	chr7:102062200-102065000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:102062400-102064800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:102062400-102065200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:102062400-102065200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links