Variant report

Variant	rs6465857
Chromosome Location	chr7:102030856-102030857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101924860..101932400-chr7:102029531..102038487,21	MCF-7	breast:
2	chr7:102024593..102027310-chr7:102030143..102032839,2	K562	blood:
3	chr7:101922803..101925073-chr7:102029717..102032176,2	K562	blood:
4	chr7:101922445..101923602-chr7:102030821..102031873,18	MCF-7	breast:
5	chr7:102029070..102031126-chr7:102034622..102037386,2	MCF-7	breast:
6	chr7:102024129..102027561-chr7:102028971..102031437,3	MCF-7	breast:
7	chr7:101922960..101924635-chr7:102029793..102032435,2	MCF-7	breast:
8	chr7:101963397..101964343-chr7:102030760..102031784,3	K562	blood:
9	chr7:102029721..102032606-chr7:102034689..102036525,3	MCF-7	breast:
10	chr7:102024593..102028556-chr7:102030143..102033068,3	K562	blood:
11	chr7:101928392..101931417-chr7:102030110..102033868,6	MCF-7	breast:
12	chr7:102030492..102033130-chr7:102034799..102036690,3	K562	blood:
13	chr7:101922403..101923365-chr7:102030831..102031862,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128563	Chromatin interaction
ENSG00000160999	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10265187	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10281876	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs13437919	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997166	1.00[EUR][1000 genomes]
rs2141041	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs59722059	1.00[EUR][1000 genomes]
rs6415337	1.00[AFR][1000 genomes]
rs6465856	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6947209	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73406252	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7384395	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7385193	1.00[EUR][1000 genomes]
rs7455543	1.00[EUR][1000 genomes]
rs7783885	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102005000-102036200	Weak transcription	Aorta	Aorta
2	chr7:102005000-102036200	Weak transcription	Small Intestine	intestine
3	chr7:102005200-102036000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:102005200-102036000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:102005400-102036000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:102005400-102036200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:102005400-102036200	Weak transcription	Psoas Muscle	Psoas
8	chr7:102012800-102031200	Strong transcription	Fetal Muscle Leg	muscle
9	chr7:102012800-102034600	Strong transcription	Fetal Stomach	stomach
10	chr7:102013600-102035800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:102015800-102036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:102017200-102031000	Strong transcription	Fetal Intestine Small	intestine
13	chr7:102017200-102031200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:102017400-102036200	Weak transcription	Right Atrium	heart
15	chr7:102018400-102035800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:102018800-102031000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:102018800-102031000	Weak transcription	NHEK	skin
18	chr7:102018800-102031200	Weak transcription	Pancreas	Pancrea
19	chr7:102018800-102032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:102018800-102036000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:102018800-102036000	Weak transcription	Colonic Mucosa	Colon
22	chr7:102018800-102036200	Weak transcription	Esophagus	oesophagus
23	chr7:102019000-102036200	Weak transcription	Gastric	stomach
24	chr7:102020600-102035800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:102021000-102031200	Weak transcription	Lung	lung
26	chr7:102021000-102035600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:102021000-102035800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:102021000-102036000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:102021200-102032200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:102021600-102032400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:102021600-102036000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:102021800-102032400	Weak transcription	Brain Substantia Nigra	brain
33	chr7:102022200-102031200	Weak transcription	HepG2	liver
34	chr7:102022400-102032400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:102022400-102032400	Weak transcription	Brain Anterior Caudate	brain
36	chr7:102022400-102035800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:102022400-102035800	Weak transcription	HUVEC	blood vessel
38	chr7:102022400-102036000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:102022400-102036000	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:102022400-102036000	Weak transcription	NHDF-Ad	bronchial
41	chr7:102022600-102032400	Weak transcription	NH-A	brain
42	chr7:102022600-102035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:102022600-102036000	Weak transcription	Fetal Brain Male	brain
44	chr7:102022800-102031000	Weak transcription	Thymus	Thymus
45	chr7:102023000-102036000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:102024400-102035800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:102024400-102036000	Weak transcription	Fetal Kidney	kidney
48	chr7:102024400-102036200	Weak transcription	Right Ventricle	heart
49	chr7:102024600-102031000	Weak transcription	NHLF	lung
50	chr7:102024600-102032200	Weak transcription	Primary monocytes fromperipheralblood	blood

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