Variant report

Variant	rs10281876
Chromosome Location	chr7:102035762-102035763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:102035707-102038232	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr7:102035683-102035867	HepG2	liver:	n/a	n/a
3	REST	chr7:102035653-102037386	H1-neurons	neurons:	n/a	n/a
4	CEBPB	chr7:102035473-102035775	MCF-7	breast:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101924860..101932400-chr7:102029531..102038487,21	MCF-7	breast:
2	chr7:101917893..101920237-chr7:102034931..102036796,3	MCF-7	breast:
3	chr7:101926103..101929302-chr7:102034428..102037305,4	K562	blood:
4	chr7:101924242..101933059-chr7:102034727..102040076,14	MCF-7	breast:
5	chr7:102027014..102029004-chr7:102035023..102036805,2	MCF-7	breast:
6	chr7:102034801..102038822-chr7:102042441..102049946,10	MCF-7	breast:
7	chr7:102029721..102032606-chr7:102034689..102036525,3	MCF-7	breast:
8	chr7:102035387..102037164-chr7:102073785..102075327,2	MCF-7	breast:
9	chr7:101916210..101918450-chr7:102034247..102037005,3	MCF-7	breast:
10	chr7:102035614..102039182-chr7:102043646..102046627,5	MCF-7	breast:
11	chr7:102030492..102033130-chr7:102034799..102036690,3	K562	blood:
12	chr7:102035604..102038403-chr7:102105375..102107150,2	K562	blood:

No data

Variant related genes	Relation type
PRKRIP1	TF binding region
ENSG00000160999	Chromatin interaction
ENSG00000221510	Chromatin interaction
ENSG00000239480	Chromatin interaction
ENSG00000160991	Chromatin interaction
ENSG00000266715	Chromatin interaction
ENSG00000161036	Chromatin interaction
ENSG00000257923	Chromatin interaction
ENSG00000128563	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10265187	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs13437919	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997166	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[EUR][1000 genomes]
rs6947209	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73406252	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7384395	1.00[EUR][1000 genomes]
rs7385193	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7455543	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783885	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102005000-102036200	Weak transcription	Aorta	Aorta
2	chr7:102005000-102036200	Weak transcription	Small Intestine	intestine
3	chr7:102005200-102036000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:102005200-102036000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:102005400-102036000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:102005400-102036200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:102005400-102036200	Weak transcription	Psoas Muscle	Psoas
8	chr7:102013600-102035800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:102015800-102036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:102017400-102036200	Weak transcription	Right Atrium	heart
11	chr7:102018400-102035800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:102018800-102036000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:102018800-102036000	Weak transcription	Colonic Mucosa	Colon
14	chr7:102018800-102036200	Weak transcription	Esophagus	oesophagus
15	chr7:102019000-102036200	Weak transcription	Gastric	stomach
16	chr7:102020600-102035800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:102021000-102035800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:102021000-102036000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:102021600-102036000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:102022400-102035800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:102022400-102035800	Weak transcription	HUVEC	blood vessel
22	chr7:102022400-102036000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:102022400-102036000	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:102022400-102036000	Weak transcription	NHDF-Ad	bronchial
25	chr7:102022600-102035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:102022600-102036000	Weak transcription	Fetal Brain Male	brain
27	chr7:102023000-102036000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:102024400-102035800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:102024400-102036000	Weak transcription	Fetal Kidney	kidney
30	chr7:102024400-102036200	Weak transcription	Right Ventricle	heart
31	chr7:102024600-102035800	Weak transcription	Fetal Brain Female	brain
32	chr7:102024600-102036000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:102025000-102036000	Weak transcription	Stomach Mucosa	stomach
34	chr7:102025000-102036200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:102025200-102036200	Weak transcription	Spleen	Spleen
36	chr7:102026600-102036000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:102027800-102036000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:102027800-102036000	Weak transcription	Adipose Nuclei	Adipose
39	chr7:102027800-102036000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:102027800-102036000	Weak transcription	HMEC	breast
41	chr7:102028000-102036200	Weak transcription	Ovary	ovary
42	chr7:102028200-102036000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:102028600-102036000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:102028800-102036200	Weak transcription	Left Ventricle	heart
45	chr7:102029000-102035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:102029000-102036000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:102029200-102036000	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:102031400-102036000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:102031600-102036000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:102031600-102036000	Weak transcription	Pancreas	Pancrea

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