Variant report

Variant	rs1997166
Chromosome Location	chr7:102068528-102068529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102065043..102072034-chr7:102072127..102076587,12	MCF-7	breast:
2	chr7:102063400..102066927-chr7:102067037..102070121,4	K562	blood:

Variant related genes	Relation type
ENSG00000160991	Chromatin interaction
ENSG00000239480	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226605	0.85[AFR][1000 genomes]
rs10240546	1.00[EUR][1000 genomes]
rs10265187	1.00[EUR][1000 genomes]
rs10281876	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997165	0.86[AFR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[EUR][1000 genomes]
rs6968559	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73406252	1.00[EUR][1000 genomes]
rs73408205	1.00[EUR][1000 genomes]
rs73408207	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7384395	1.00[EUR][1000 genomes]
rs7385193	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7385860	0.82[AFR][1000 genomes]
rs7455543	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102038800-102068600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:102039200-102070000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:102039800-102068600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:102050800-102073400	Weak transcription	Psoas Muscle	Psoas
5	chr7:102051000-102068600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:102051200-102073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:102051400-102074400	Weak transcription	Fetal Heart	heart
8	chr7:102051600-102070000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:102053600-102073200	Weak transcription	Right Atrium	heart
10	chr7:102054000-102073400	Weak transcription	Small Intestine	intestine
11	chr7:102061600-102071400	Weak transcription	Fetal Kidney	kidney
12	chr7:102061600-102072200	Weak transcription	HMEC	breast
13	chr7:102063400-102071000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:102064000-102068800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:102064200-102068600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:102064600-102068800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:102065000-102069200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:102065400-102071000	Weak transcription	Fetal Brain Male	brain
19	chr7:102065600-102068800	Strong transcription	HSMM	muscle
20	chr7:102065600-102071200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:102066000-102068600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:102066000-102073400	Weak transcription	HUVEC	blood vessel
23	chr7:102066200-102069200	Strong transcription	Fetal Stomach	stomach
24	chr7:102066200-102071200	Weak transcription	K562	blood
25	chr7:102066200-102072400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:102066200-102074000	Weak transcription	Fetal Lung	lung
27	chr7:102066400-102069200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:102066400-102072200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:102066400-102073600	Weak transcription	NHDF-Ad	bronchial
30	chr7:102066600-102071200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr7:102066600-102073400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr7:102066800-102069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:102066800-102069800	Strong transcription	Fetal Intestine Small	intestine
34	chr7:102066800-102070000	Weak transcription	Esophagus	oesophagus
35	chr7:102066800-102073200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:102067000-102071400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:102067000-102072200	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:102067200-102071200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:102067400-102071400	Weak transcription	A549	lung
40	chr7:102067400-102073200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:102067400-102073200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:102067400-102073400	Weak transcription	Aorta	Aorta
43	chr7:102067400-102073400	Weak transcription	NH-A	brain
44	chr7:102067400-102073600	Weak transcription	Hela-S3	cervix
45	chr7:102067600-102068600	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:102067600-102068600	Genic enhancers	Thymus	Thymus
47	chr7:102067600-102069000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr7:102067600-102069800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:102067600-102069800	Genic enhancers	Fetal Thymus	thymus
50	chr7:102067600-102070200	Strong transcription	Fetal Muscle Leg	muscle

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