Variant report

Variant	rs73712461
Chromosome Location	chr7:101952380-101952381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101933934..101936298-chr7:101951581..101953703,2	MCF-7	breast:
2	chr7:101928436..101931532-chr7:101950197..101953124,5	MCF-7	breast:
3	chr7:101930945..101933458-chr7:101949436..101952380,2	K562	blood:

Variant related genes	Relation type
ENSG00000160999	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10265187	1.00[EUR][1000 genomes]
rs10281876	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs13437919	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997166	1.00[EUR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs55750768	1.00[AMR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs59722059	1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[EUR][1000 genomes]
rs6947209	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs7384395	1.00[EUR][1000 genomes]
rs7385193	1.00[EUR][1000 genomes]
rs7455543	1.00[EUR][1000 genomes]
rs7783885	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758126	chr7:101912320-102005026	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	esv2759548	chr7:101912320-102005026	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
12	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
13	esv1822373	chr7:101913187-101969458	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
14	nsv888830	chr7:101926788-101957518	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	22 gene(s)	inside rSNPs	diseases
15	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101944000-101975400	Weak transcription	Right Atrium	heart
2	chr7:101944200-101957600	Weak transcription	Ovary	ovary
3	chr7:101944200-101958200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:101944400-101959200	Weak transcription	Esophagus	oesophagus
5	chr7:101944800-101954200	Strong transcription	Fetal Brain Female	brain
6	chr7:101946600-101952400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:101947800-101959800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:101948200-101960400	Weak transcription	Right Ventricle	heart
9	chr7:101949600-101957800	Weak transcription	Aorta	Aorta
10	chr7:101950400-101954000	Weak transcription	Brain Angular Gyrus	brain
11	chr7:101950600-101953600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:101950600-101953600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:101950600-101954000	Weak transcription	Fetal Brain Male	brain
14	chr7:101950600-101961400	Weak transcription	Left Ventricle	heart
15	chr7:101950800-101953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:101950800-101953800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:101950800-101954200	Weak transcription	Fetal Intestine Large	intestine
18	chr7:101950800-101954600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:101950800-101959600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:101950800-101961400	Weak transcription	Pancreas	Pancrea
21	chr7:101950800-101961600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:101950800-101962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:101950800-101963800	Strong transcription	Brain Germinal Matrix	brain
24	chr7:101951000-101954400	Strong transcription	HSMMtube	muscle
25	chr7:101951000-101955200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:101951000-101957400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:101951000-101957600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:101951000-101957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:101951000-101957600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:101951000-101957800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:101951000-101958200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:101951000-101958400	Weak transcription	Adipose Nuclei	Adipose
33	chr7:101951000-101959400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:101951000-101959600	Weak transcription	Psoas Muscle	Psoas
35	chr7:101951000-101960000	Weak transcription	Colonic Mucosa	Colon
36	chr7:101951000-101961400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:101951000-101961400	Weak transcription	Fetal Kidney	kidney
38	chr7:101951000-101961400	Strong transcription	Fetal Stomach	stomach
39	chr7:101951000-101961400	Weak transcription	Gastric	stomach
40	chr7:101951000-101961600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:101951000-101961800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:101951000-101963000	Weak transcription	Fetal Lung	lung
43	chr7:101951000-101964000	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:101951000-101964400	Weak transcription	Brain Substantia Nigra	brain
45	chr7:101951200-101952400	Genic enhancers	Primary B cells from peripheral blood	blood
46	chr7:101951200-101954000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr7:101951200-101955200	Genic enhancers	GM12878-XiMat	blood
48	chr7:101951200-101959000	Strong transcription	Fetal Muscle Leg	muscle
49	chr7:101951200-101959200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:101951200-101961400	Weak transcription	Primary hematopoietic stem cells	blood

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