Variant report

Variant	rs803100
Chromosome Location	chr7:101962927-101962928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101962260..101964912-chr7:101971375..101973484,2	MCF-7	breast:
2	chr7:101929445..101932504-chr7:101961443..101964470,3	MCF-7	breast:
3	chr7:101958775..101961646-chr7:101962765..101965626,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALKBH4-6	chr7:101962695-101962993	expReg_chr7_6761_-

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10265187	1.00[EUR][1000 genomes]
rs10281876	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs13437919	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997166	1.00[EUR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs59722059	1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[EUR][1000 genomes]
rs6947209	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7384395	1.00[EUR][1000 genomes]
rs7385193	1.00[EUR][1000 genomes]
rs7455543	1.00[EUR][1000 genomes]
rs7783885	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803099	0.95[AFR][1000 genomes]
rs803101	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803112	0.82[AFR][1000 genomes]
rs803113	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758126	chr7:101912320-102005026	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	esv2759548	chr7:101912320-102005026	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
12	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
13	esv1822373	chr7:101913187-101969458	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
15	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	esv3402993	chr7:101960482-101962980	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv3375731	chr7:101960857-101963405	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101944000-101975400	Weak transcription	Right Atrium	heart
2	chr7:101950800-101963800	Strong transcription	Brain Germinal Matrix	brain
3	chr7:101951000-101963000	Weak transcription	Fetal Lung	lung
4	chr7:101951000-101964000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:101951000-101964400	Weak transcription	Brain Substantia Nigra	brain
6	chr7:101952600-101963800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:101954000-101963000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:101955600-101964000	Strong transcription	Fetal Brain Female	brain
9	chr7:101957400-101963400	Enhancers	Placenta	Placenta
10	chr7:101958200-101963400	Weak transcription	Aorta	Aorta
11	chr7:101959600-101968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:101961200-101963200	Enhancers	Fetal Muscle Trunk	muscle
13	chr7:101961200-101963200	Genic enhancers	Fetal Muscle Leg	muscle
14	chr7:101961400-101963600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr7:101961600-101963200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:101961600-101968000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:101961600-101968400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr7:101961800-101963200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr7:101961800-101963400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:101961800-101963400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:101961800-101964600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:101961800-101964800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:101961800-101965000	Weak transcription	HSMMtube	muscle
24	chr7:101961800-101968400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:101962000-101973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:101962200-101963200	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr7:101962400-101963000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:101962400-101963800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:101962400-101967800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:101962600-101963000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr7:101962800-101963000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:101962800-101963400	Enhancers	Adipose Nuclei	Adipose
33	chr7:101962800-101963400	Weak transcription	Lung	lung
34	chr7:101962800-101970800	Weak transcription	GM12878-XiMat	blood
35	chr7:101962800-101971600	Weak transcription	Primary B cells from cord blood	blood

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