Variant report

Variant	rs57369710
Chromosome Location	chr7:102082127-102082128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:102079604..102082323-chr7:102098153..102099858,2	K562	blood:
2	chr7:102077007..102082389-chr7:102085865..102088715,6	K562	blood:
3	chr7:102079057..102082389-chr7:102085865..102088701,3	K562	blood:
4	chr7:102080629..102083879-chr7:102103708..102106434,4	K562	blood:
5	chr7:102081053..102083891-chr7:102093454..102096463,3	K562	blood:
6	chr7:102073044..102075691-chr7:102080784..102083649,2	K562	blood:
7	chr7:102080981..102083598-chr7:102093861..102096149,2	K562	blood:
8	chr7:102071879..102076945-chr7:102079326..102082445,6	MCF-7	breast:
9	chr7:102079461..102082152-chr7:102104295..102106283,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160993	Chromatin interaction
ENSG00000266715	Chromatin interaction
ENSG00000161036	Chromatin interaction
ENSG00000160991	Chromatin interaction
ENSG00000239480	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10240546	1.00[EUR][1000 genomes]
rs10265187	1.00[EUR][1000 genomes]
rs10281876	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs1997166	1.00[EUR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs6465862	1.00[EUR][1000 genomes]
rs6465863	1.00[EUR][1000 genomes]
rs6968559	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73406252	1.00[EUR][1000 genomes]
rs73408205	1.00[EUR][1000 genomes]
rs73408207	1.00[EUR][1000 genomes]
rs73408209	1.00[EUR][1000 genomes]
rs73408210	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7384395	1.00[EUR][1000 genomes]
rs7385193	1.00[EUR][1000 genomes]
rs7455543	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]
rs941064	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
21	esv1832541	chr7:102072448-102328097	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
22	nsv1025363	chr7:102072448-102471485	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
23	esv1803868	chr7:102080919-102109591	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102074600-102085400	Weak transcription	Gastric	stomach
2	chr7:102074600-102086800	Weak transcription	Aorta	Aorta
3	chr7:102075000-102082200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:102075000-102086800	Weak transcription	Fetal Lung	lung
5	chr7:102075000-102099800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:102075000-102104000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:102075200-102085600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:102075200-102086800	Weak transcription	Liver	Liver
9	chr7:102075200-102086800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:102075200-102086800	Weak transcription	Colonic Mucosa	Colon
11	chr7:102075200-102086800	Weak transcription	Fetal Intestine Large	intestine
12	chr7:102075200-102087000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:102075200-102092000	Weak transcription	Esophagus	oesophagus
14	chr7:102075200-102095200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:102075200-102097600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:102075200-102104200	Weak transcription	Fetal Kidney	kidney
17	chr7:102075400-102082200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:102075400-102087000	Weak transcription	Placenta	Placenta
19	chr7:102075400-102087000	Weak transcription	Pancreas	Pancrea
20	chr7:102075400-102087000	Weak transcription	Dnd41	blood
21	chr7:102075400-102097000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr7:102075600-102103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:102075800-102103600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:102076000-102085400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:102076000-102086800	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:102076000-102097600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:102076000-102104200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:102076200-102084200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:102076400-102083200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:102076400-102083800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:102076600-102085400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:102076600-102090000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:102076600-102091200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:102076600-102091400	Strong transcription	Fetal Stomach	stomach
35	chr7:102076800-102083200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr7:102078400-102084400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:102078600-102082800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:102079000-102082800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr7:102079200-102082600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr7:102079200-102082600	Strong transcription	Primary T cells from cord blood	blood
41	chr7:102079200-102082800	Strong transcription	Fetal Brain Female	brain
42	chr7:102079200-102083000	Strong transcription	Brain Germinal Matrix	brain
43	chr7:102079200-102083200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:102079200-102083400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:102079400-102082600	Genic enhancers	Fetal Muscle Trunk	muscle
46	chr7:102079400-102082800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:102079400-102084800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:102079800-102082200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:102079800-102085600	Weak transcription	Ovary	ovary
50	chr7:102079800-102086800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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