Variant report

Variant	rs73408210
Chromosome Location	chr7:102519978-102519979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10230292	1.00[EUR][1000 genomes]
rs10240546	1.00[EUR][1000 genomes]
rs10808123	1.00[EUR][1000 genomes]
rs10808124	1.00[EUR][1000 genomes]
rs10808125	1.00[EUR][1000 genomes]
rs10808127	1.00[EUR][1000 genomes]
rs1141567	1.00[EUR][1000 genomes]
rs11560367	1.00[EUR][1000 genomes]
rs11981558	1.00[EUR][1000 genomes]
rs13226097	1.00[EUR][1000 genomes]
rs13242079	1.00[EUR][1000 genomes]
rs1404213	1.00[EUR][1000 genomes]
rs1861728	1.00[EUR][1000 genomes]
rs1861730	1.00[EUR][1000 genomes]
rs1974716	1.00[EUR][1000 genomes]
rs2041949	1.00[EUR][1000 genomes]
rs2098447	1.00[EUR][1000 genomes]
rs2193418	1.00[EUR][1000 genomes]
rs3181009	1.00[EUR][1000 genomes]
rs4727560	1.00[EUR][1000 genomes]
rs4729868	1.00[EUR][1000 genomes]
rs4729869	1.00[EUR][1000 genomes]
rs4729870	1.00[EUR][1000 genomes]
rs4729871	1.00[EUR][1000 genomes]
rs4729872	1.00[EUR][1000 genomes]
rs4729875	1.00[EUR][1000 genomes]
rs4729876	1.00[EUR][1000 genomes]
rs4729878	1.00[EUR][1000 genomes]
rs56938507	1.00[EUR][1000 genomes]
rs57013410	1.00[EUR][1000 genomes]
rs57055721	1.00[EUR][1000 genomes]
rs57369710	1.00[EUR][1000 genomes]
rs61187383	1.00[EUR][1000 genomes]
rs61676871	1.00[EUR][1000 genomes]
rs6946989	1.00[EUR][1000 genomes]
rs6950177	1.00[EUR][1000 genomes]
rs6959711	1.00[EUR][1000 genomes]
rs6966872	1.00[EUR][1000 genomes]
rs6968559	1.00[EUR][1000 genomes]
rs6976034	1.00[EUR][1000 genomes]
rs6976794	1.00[EUR][1000 genomes]
rs6979140	1.00[EUR][1000 genomes]
rs6979470	1.00[EUR][1000 genomes]
rs73404325	1.00[EUR][1000 genomes]
rs73404327	1.00[EUR][1000 genomes]
rs73406252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408209	1.00[EUR][1000 genomes]
rs73408223	1.00[EUR][1000 genomes]
rs73408251	1.00[EUR][1000 genomes]
rs73408254	1.00[EUR][1000 genomes]
rs73408255	1.00[EUR][1000 genomes]
rs73408259	1.00[EUR][1000 genomes]
rs73408285	1.00[EUR][1000 genomes]
rs73408286	1.00[EUR][1000 genomes]
rs73410119	1.00[EUR][1000 genomes]
rs73410129	1.00[EUR][1000 genomes]
rs73410143	1.00[EUR][1000 genomes]
rs7349957	1.00[EUR][1000 genomes]
rs7350051	1.00[EUR][1000 genomes]
rs7783856	1.00[EUR][1000 genomes]
rs7784337	1.00[EUR][1000 genomes]
rs7807900	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102501200-102530800	Weak transcription	Ovary	ovary
2	chr7:102508000-102522200	Weak transcription	Fetal Stomach	stomach
3	chr7:102508000-102529200	Weak transcription	Fetal Lung	lung
4	chr7:102513800-102531600	Weak transcription	Fetal Brain Male	brain
5	chr7:102515600-102527400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:102516800-102521200	Weak transcription	Esophagus	oesophagus
7	chr7:102516800-102522200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:102516800-102523400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:102517000-102523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:102517000-102523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:102517000-102549600	Weak transcription	Gastric	stomach
12	chr7:102517200-102523400	Weak transcription	Stomach Mucosa	stomach
13	chr7:102517200-102529600	Weak transcription	NHLF	lung
14	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:102517400-102520800	Weak transcription	A549	lung
16	chr7:102517400-102520800	Weak transcription	Hela-S3	cervix
17	chr7:102517400-102523400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:102517400-102523600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:102517600-102523200	Weak transcription	HMEC	breast
20	chr7:102517600-102523400	Weak transcription	NH-A	brain
21	chr7:102517800-102520600	Weak transcription	HUVEC	blood vessel
22	chr7:102517800-102523400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:102519800-102520000	Weak transcription	Aorta	Aorta
24	chr7:102519800-102520200	Weak transcription	Pancreas	Pancrea
25	chr7:102519800-102521000	Weak transcription	K562	blood

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