Variant report

Variant	rs4729876
Chromosome Location	chr7:102735741-102735742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr7:102735551-102735788	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:102735656-102735790	HepG2	liver:	n/a	n/a
3	POLR2A	chr7:102735702-102736047	K562	blood:	n/a	n/a
4	POLR2A	chr7:102735713-102735775	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:102714716..102718005-chr7:102734624..102737524,3	MCF-7	breast:
2	chr7:102715186..102716937-chr7:102734053..102736983,2	K562	blood:
3	chr7:102715186..102716960-chr7:102734053..102738564,5	K562	blood:
4	chr7:102733228..102736205-chr7:102789279..102791780,2	MCF-7	breast:

No data

Variant related genes	Relation type
ARMC10	TF binding region
ENSG00000161040	Chromatin interaction
ENSG00000170632	Chromatin interaction
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10229137	1.00[EUR][1000 genomes]
rs10230292	1.00[EUR][1000 genomes]
rs10232494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240086	1.00[EUR][1000 genomes]
rs10260344	1.00[EUR][1000 genomes]
rs10264869	1.00[EUR][1000 genomes]
rs10268112	1.00[EUR][1000 genomes]
rs10268849	1.00[EUR][1000 genomes]
rs10808123	1.00[EUR][1000 genomes]
rs10808124	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808125	1.00[EUR][1000 genomes]
rs10808127	1.00[EUR][1000 genomes]
rs11560367	1.00[EUR][1000 genomes]
rs11760826	1.00[EUR][1000 genomes]
rs11765948	1.00[EUR][1000 genomes]
rs11772979	1.00[EUR][1000 genomes]
rs11773883	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981558	1.00[EUR][1000 genomes]
rs12155099	1.00[EUR][1000 genomes]
rs12539639	1.00[EUR][1000 genomes]
rs13225565	1.00[EUR][1000 genomes]
rs13226097	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13242079	1.00[EUR][1000 genomes]
rs13247932	1.00[EUR][1000 genomes]
rs1404213	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477159	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477160	0.93[AFR][1000 genomes]
rs1477161	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477162	1.00[EUR][1000 genomes]
rs1477163	1.00[EUR][1000 genomes]
rs1558853	1.00[EUR][1000 genomes]
rs1861725	1.00[EUR][1000 genomes]
rs1861726	1.00[EUR][1000 genomes]
rs1861728	1.00[EUR][1000 genomes]
rs1861730	1.00[EUR][1000 genomes]
rs1861732	1.00[EUR][1000 genomes]
rs1968198	1.00[EUR][1000 genomes]
rs1968199	1.00[EUR][1000 genomes]
rs1968202	1.00[EUR][1000 genomes]
rs1974715	1.00[EUR][1000 genomes]
rs1974716	1.00[EUR][1000 genomes]
rs2015289	1.00[EUR][1000 genomes]
rs2041949	1.00[EUR][1000 genomes]
rs2098447	1.00[EUR][1000 genomes]
rs2111381	1.00[EUR][1000 genomes]
rs2193418	1.00[EUR][1000 genomes]
rs2411079	1.00[EUR][1000 genomes]
rs2411081	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411082	1.00[EUR][1000 genomes]
rs2898640	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3181009	1.00[EUR][1000 genomes]
rs4295594	1.00[EUR][1000 genomes]
rs4530973	1.00[EUR][1000 genomes]
rs4727560	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4727561	1.00[EUR][1000 genomes]
rs4729868	1.00[EUR][1000 genomes]
rs4729869	1.00[EUR][1000 genomes]
rs4729870	1.00[EUR][1000 genomes]
rs4729871	1.00[EUR][1000 genomes]
rs4729872	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729875	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729878	1.00[EUR][1000 genomes]
rs4729882	1.00[EUR][1000 genomes]
rs4729883	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729884	1.00[EUR][1000 genomes]
rs4729892	1.00[EUR][1000 genomes]
rs56938507	1.00[EUR][1000 genomes]
rs59182081	1.00[EUR][1000 genomes]
rs61187383	1.00[EUR][1000 genomes]
rs61676871	1.00[EUR][1000 genomes]
rs62622397	1.00[EUR][1000 genomes]
rs6465891	1.00[EUR][1000 genomes]
rs6465892	1.00[EUR][1000 genomes]
rs6465898	1.00[EUR][1000 genomes]
rs6465902	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465905	1.00[EUR][1000 genomes]
rs6465907	1.00[EUR][1000 genomes]
rs6465911	1.00[EUR][1000 genomes]
rs6944809	1.00[EUR][1000 genomes]
rs6945578	1.00[EUR][1000 genomes]
rs6946968	1.00[EUR][1000 genomes]
rs6946989	1.00[EUR][1000 genomes]
rs6947777	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950177	1.00[EUR][1000 genomes]
rs6955436	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6959711	1.00[EUR][1000 genomes]
rs6964822	1.00[EUR][1000 genomes]
rs6966872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966961	1.00[EUR][1000 genomes]
rs6973702	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973787	1.00[EUR][1000 genomes]
rs6976034	1.00[EUR][1000 genomes]
rs6976290	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976794	1.00[EUR][1000 genomes]
rs6977206	1.00[EUR][1000 genomes]
rs6979140	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6979470	1.00[EUR][1000 genomes]
rs73408205	1.00[EUR][1000 genomes]
rs73408207	1.00[EUR][1000 genomes]
rs73408209	1.00[EUR][1000 genomes]
rs73408210	1.00[EUR][1000 genomes]
rs73408223	1.00[EUR][1000 genomes]
rs73408251	1.00[EUR][1000 genomes]
rs73408254	1.00[EUR][1000 genomes]
rs73408255	1.00[EUR][1000 genomes]
rs73408259	1.00[EUR][1000 genomes]
rs73408285	1.00[EUR][1000 genomes]
rs73408286	1.00[EUR][1000 genomes]
rs73410119	1.00[EUR][1000 genomes]
rs73410129	1.00[EUR][1000 genomes]
rs73410143	1.00[EUR][1000 genomes]
rs73412168	1.00[EUR][1000 genomes]
rs73412171	1.00[EUR][1000 genomes]
rs7349957	1.00[EUR][1000 genomes]
rs7350051	1.00[EUR][1000 genomes]
rs7782147	1.00[EUR][1000 genomes]
rs7783856	1.00[EUR][1000 genomes]
rs7784337	1.00[EUR][1000 genomes]
rs7792240	1.00[EUR][1000 genomes]
rs7807900	1.00[EUR][1000 genomes]
rs7811224	1.00[EUR][1000 genomes]
rs952521	0.83[AFR][1000 genomes]
rs9640672	1.00[EUR][1000 genomes]
rs9641307	1.00[EUR][1000 genomes]
rs9641308	1.00[EUR][1000 genomes]
rs9691829	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
2	chr7:102716600-102737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
6	chr7:102716600-102760200	Weak transcription	Lung	lung
7	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
8	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
9	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
11	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
13	chr7:102717600-102738600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
15	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:102722200-102738600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:102722600-102738600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:102723000-102738200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:102723400-102738600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:102723400-102738600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:102723600-102738600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:102723800-102738600	Strong transcription	Fetal Thymus	thymus
26	chr7:102724000-102735800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
30	chr7:102724200-102735800	Strong transcription	Adipose Nuclei	Adipose
31	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:102725600-102739400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:102725600-102746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:102725600-102746400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:102725800-102737000	Weak transcription	Gastric	stomach
38	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:102726200-102742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
41	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
42	chr7:102728000-102735800	Weak transcription	Fetal Lung	lung
43	chr7:102728000-102737600	Weak transcription	HSMMtube	muscle
44	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:102728200-102737200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:102728600-102738000	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:102728600-102753400	Weak transcription	NHDF-Ad	bronchial
48	chr7:102729600-102737200	Weak transcription	Osteobl	bone
49	chr7:102729800-102735800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:102729800-102735800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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