Variant report

Variant	rs4729884
Chromosome Location	chr7:102766661-102766662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10229137	1.00[EUR][1000 genomes]
rs10230292	1.00[EUR][1000 genomes]
rs10240086	1.00[EUR][1000 genomes]
rs10260344	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268112	1.00[EUR][1000 genomes]
rs10268849	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808123	1.00[EUR][1000 genomes]
rs10808124	1.00[EUR][1000 genomes]
rs10808125	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808126	0.91[AMR][1000 genomes]
rs10808127	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953379	0.87[AMR][1000 genomes]
rs11560367	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11760826	1.00[EUR][1000 genomes]
rs11765948	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11772979	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773883	1.00[EUR][1000 genomes]
rs11981558	1.00[EUR][1000 genomes]
rs12155099	1.00[EUR][1000 genomes]
rs12539639	1.00[EUR][1000 genomes]
rs13225565	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13226097	1.00[EUR][1000 genomes]
rs13242079	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13247932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1404213	1.00[EUR][1000 genomes]
rs1477159	1.00[EUR][1000 genomes]
rs1477161	1.00[EUR][1000 genomes]
rs1477162	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477163	0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1558853	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1861725	1.00[EUR][1000 genomes]
rs1861726	1.00[EUR][1000 genomes]
rs1861728	1.00[EUR][1000 genomes]
rs1861730	1.00[EUR][1000 genomes]
rs1861732	1.00[EUR][1000 genomes]
rs1968198	0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968199	0.83[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968202	1.00[EUR][1000 genomes]
rs1974715	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1974716	1.00[EUR][1000 genomes]
rs2015289	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2041949	1.00[EUR][1000 genomes]
rs2098447	1.00[EUR][1000 genomes]
rs2111381	1.00[EUR][1000 genomes]
rs2193418	1.00[EUR][1000 genomes]
rs2411078	0.86[AMR][1000 genomes]
rs2411079	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411081	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411082	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898640	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181009	0.86[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4294127	0.87[AMR][1000 genomes]
rs4295594	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4374923	0.87[AMR][1000 genomes]
rs4530973	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4727560	1.00[EUR][1000 genomes]
rs4727561	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729868	1.00[EUR][1000 genomes]
rs4729869	1.00[EUR][1000 genomes]
rs4729870	1.00[EUR][1000 genomes]
rs4729871	1.00[EUR][1000 genomes]
rs4729872	1.00[EUR][1000 genomes]
rs4729875	1.00[EUR][1000 genomes]
rs4729876	1.00[EUR][1000 genomes]
rs4729878	1.00[EUR][1000 genomes]
rs4729882	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729883	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729892	1.00[EUR][1000 genomes]
rs56938507	1.00[EUR][1000 genomes]
rs59179196	1.00[EUR][1000 genomes]
rs59182081	1.00[EUR][1000 genomes]
rs60006777	1.00[EUR][1000 genomes]
rs61187383	1.00[EUR][1000 genomes]
rs61676871	1.00[EUR][1000 genomes]
rs62622397	1.00[EUR][1000 genomes]
rs6465891	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465892	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465893	0.91[AMR][1000 genomes]
rs6465898	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465899	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6465901	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6465902	1.00[EUR][1000 genomes]
rs6465904	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6465905	1.00[EUR][1000 genomes]
rs6465907	1.00[EUR][1000 genomes]
rs6465911	1.00[EUR][1000 genomes]
rs6944809	1.00[EUR][1000 genomes]
rs6945578	1.00[EUR][1000 genomes]
rs6946968	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946989	1.00[EUR][1000 genomes]
rs6947777	1.00[EUR][1000 genomes]
rs6950177	1.00[EUR][1000 genomes]
rs6955436	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6959711	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6964717	0.98[AFR][1000 genomes]
rs6964822	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966872	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966961	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973702	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973787	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976034	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976290	1.00[EUR][1000 genomes]
rs6976794	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977206	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6979140	1.00[EUR][1000 genomes]
rs6979470	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408251	1.00[EUR][1000 genomes]
rs73408254	1.00[EUR][1000 genomes]
rs73408255	1.00[EUR][1000 genomes]
rs73408259	1.00[EUR][1000 genomes]
rs73408285	1.00[EUR][1000 genomes]
rs73408286	1.00[EUR][1000 genomes]
rs73410119	1.00[EUR][1000 genomes]
rs73410129	1.00[EUR][1000 genomes]
rs73410143	1.00[EUR][1000 genomes]
rs73412168	1.00[EUR][1000 genomes]
rs73412171	1.00[EUR][1000 genomes]
rs73412175	1.00[EUR][1000 genomes]
rs7349957	1.00[EUR][1000 genomes]
rs7350051	1.00[EUR][1000 genomes]
rs7782147	1.00[EUR][1000 genomes]
rs7783856	1.00[EUR][1000 genomes]
rs7784337	1.00[EUR][1000 genomes]
rs7792240	0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801969	0.87[AMR][1000 genomes]
rs7807900	1.00[EUR][1000 genomes]
rs7811224	1.00[EUR][1000 genomes]
rs952521	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9640672	1.00[EUR][1000 genomes]
rs9641307	1.00[EUR][1000 genomes]
rs9641308	1.00[EUR][1000 genomes]
rs9649256	0.84[AMR][1000 genomes]
rs9691829	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
2	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
3	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
4	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
7	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
10	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:102738400-102767800	Weak transcription	Pancreas	Pancrea
14	chr7:102738400-102768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
17	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:102747200-102768200	Weak transcription	Fetal Heart	heart
19	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:102747600-102768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:102747600-102768000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:102753800-102767200	Weak transcription	Hela-S3	cervix
25	chr7:102754000-102770400	Weak transcription	NHLF	lung
26	chr7:102754200-102766800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
28	chr7:102754400-102771800	Weak transcription	NHEK	skin
29	chr7:102755200-102770000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:102755200-102772000	Weak transcription	HMEC	breast
31	chr7:102755400-102767200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:102755400-102768400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:102755600-102768200	Weak transcription	Osteobl	bone
34	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:102755800-102767800	Weak transcription	NHDF-Ad	bronchial
36	chr7:102757200-102769200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:102757400-102769000	Strong transcription	Dnd41	blood
38	chr7:102757600-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:102758600-102769800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:102758800-102769200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:102759200-102769200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:102759200-102769200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:102759400-102769200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr7:102759800-102769200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr7:102760200-102769200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:102760200-102770200	Weak transcription	Aorta	Aorta
47	chr7:102760600-102768000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:102760600-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:102760600-102771800	Weak transcription	Esophagus	oesophagus
50	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell

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