Variant report

Variant	rs9649256
Chromosome Location	chr7:102750458-102750459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10260344	0.84[AMR][1000 genomes]
rs10264869	0.84[AMR][1000 genomes]
rs10268849	0.84[AMR][1000 genomes]
rs10808122	0.82[AFR][1000 genomes]
rs10808123	0.84[AFR][1000 genomes]
rs10808125	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10808126	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10808127	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10953379	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11560367	0.84[AMR][1000 genomes]
rs11981558	0.84[AFR][1000 genomes]
rs13225565	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13242079	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13247932	0.84[AMR][1000 genomes]
rs1477163	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1558853	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1861728	0.84[AFR][1000 genomes]
rs1861730	0.84[AFR][1000 genomes]
rs1968198	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1968199	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1974715	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1974716	0.83[AFR][1000 genomes]
rs2015289	0.84[AMR][1000 genomes]
rs2041949	0.84[AFR][1000 genomes]
rs2193418	0.84[AFR][1000 genomes]
rs2411078	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2411079	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2411082	0.84[AMR][1000 genomes]
rs3181009	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4294127	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4295594	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4374923	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4440560	0.98[AFR][1000 genomes]
rs4729868	0.84[AFR][1000 genomes]
rs4729870	0.84[AFR][1000 genomes]
rs4729871	0.84[AFR][1000 genomes]
rs4729878	0.84[AFR][1000 genomes]
rs4729882	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4729884	0.84[AMR][1000 genomes]
rs6465891	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6465892	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6465893	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6465898	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6946968	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6946989	0.84[AFR][1000 genomes]
rs6959711	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6966872	0.84[AFR][1000 genomes]
rs6966961	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6973787	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6976034	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6976794	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6977206	0.84[AMR][1000 genomes]
rs6979470	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7349957	0.82[AFR][1000 genomes]
rs7350051	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7792240	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7801969	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9649257	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716600-102760200	Weak transcription	Lung	lung
2	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
3	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
4	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
6	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
7	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
11	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
17	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:102728600-102753400	Weak transcription	NHDF-Ad	bronchial
19	chr7:102730200-102760200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:102731000-102753400	Weak transcription	Hela-S3	cervix
22	chr7:102732400-102753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:102732600-102753400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:102734200-102753200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:102734200-102753600	Weak transcription	Esophagus	oesophagus
26	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:102734400-102753400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:102737800-102754800	Weak transcription	Fetal Kidney	kidney
30	chr7:102738400-102753200	Weak transcription	NH-A	brain
31	chr7:102738400-102753600	Weak transcription	HSMMtube	muscle
32	chr7:102738400-102757400	Weak transcription	Left Ventricle	heart
33	chr7:102738400-102767800	Weak transcription	Pancreas	Pancrea
34	chr7:102738400-102768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:102738600-102761200	Weak transcription	Placenta	Placenta
37	chr7:102741000-102751000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
39	chr7:102741600-102753200	Weak transcription	NHEK	skin
40	chr7:102741600-102753200	Weak transcription	Osteobl	bone
41	chr7:102741800-102759200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:102742200-102757200	Weak transcription	K562	blood
43	chr7:102743000-102761800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:102743200-102753600	Weak transcription	NHLF	lung
45	chr7:102743600-102753200	Weak transcription	Fetal Brain Female	brain
46	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:102743800-102753200	Weak transcription	HMEC	breast
48	chr7:102744400-102753200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:102744400-102759200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr7:102744400-102760200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links