Variant report

Variant	rs6465899
Chromosome Location	chr7:102769511-102769512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:
2	chr7:102768661..102770916-chr7:102788853..102790814,2	MCF-7	breast:
3	chr7:102767416..102772548-chr7:102787742..102792429,7	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10260344	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10264869	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10268849	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11765948	1.00[AFR][1000 genomes]
rs11772979	1.00[AFR][1000 genomes]
rs13247932	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1477162	1.00[AFR][1000 genomes]
rs1974715	0.80[AFR][1000 genomes]
rs2015289	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2411082	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2898640	0.86[AFR][1000 genomes]
rs4530973	1.00[AFR][1000 genomes]
rs4727561	1.00[AFR][1000 genomes]
rs4729874	1.00[ASN][1000 genomes]
rs4729884	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6465901	1.00[AFR][1000 genomes]
rs6465904	1.00[AFR][1000 genomes]
rs6955436	0.86[AFR][1000 genomes]
rs6964717	0.98[AFR][1000 genomes]
rs6964822	1.00[AFR][1000 genomes]
rs6973787	0.83[AFR][1000 genomes]
rs6977206	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs952521	0.86[AFR][1000 genomes]
rs9691829	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
2	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
4	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
10	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:102754000-102770400	Weak transcription	NHLF	lung
15	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
16	chr7:102754400-102771800	Weak transcription	NHEK	skin
17	chr7:102755200-102770000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:102755200-102772000	Weak transcription	HMEC	breast
19	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:102758600-102769800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:102760200-102770200	Weak transcription	Aorta	Aorta
22	chr7:102760600-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:102760600-102771800	Weak transcription	Esophagus	oesophagus
24	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:102760600-102782200	Weak transcription	HSMM	muscle
26	chr7:102760800-102770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:102762000-102770400	Weak transcription	Placenta	Placenta
28	chr7:102763400-102770800	Weak transcription	Colonic Mucosa	Colon
29	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:102765600-102770200	Weak transcription	HepG2	liver
32	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
33	chr7:102768600-102774200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:102768800-102769600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:102768800-102769600	Weak transcription	A549	lung
36	chr7:102768800-102770000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:102768800-102770200	Weak transcription	Fetal Lung	lung
38	chr7:102768800-102770200	Weak transcription	Ovary	ovary
39	chr7:102768800-102770200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr7:102768800-102771000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:102768800-102771800	Weak transcription	Fetal Stomach	stomach
42	chr7:102768800-102772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:102768800-102773400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr7:102768800-102773600	Weak transcription	Spleen	Spleen
45	chr7:102768800-102775200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:102768800-102775600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:102768800-102775800	Weak transcription	Gastric	stomach
48	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea

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