Variant report

Variant	rs4729874
Chromosome Location	chr7:102732772-102732773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:102732719-102732818	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:102714473..102716689-chr7:102731603..102733946,2	MCF-7	breast:
2	chr7:102724877..102726514-chr7:102730311..102733087,2	K562	blood:
3	chr7:102714750..102718299-chr7:102732426..102735665,4	MCF-7	breast:
4	chr7:102731360..102734429-chr7:102788737..102792163,3	K562	blood:

Variant related genes	Relation type
ARMC10	TF binding region
CRYZP1	TF binding region
ENSG00000161048	Chromatin interaction
ENSG00000170632	Chromatin interaction
ENSG00000161040	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10808122	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10808123	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10808124	0.82[AMR][1000 genomes]
rs10808125	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10808126	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10808127	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10953378	0.83[AFR][1000 genomes]
rs11560367	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11981558	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs13225565	0.83[AMR][1000 genomes]
rs13226097	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13242079	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1404213	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1477163	0.83[AMR][1000 genomes]
rs1861728	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1861730	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1968198	0.83[AMR][1000 genomes]
rs1968199	0.83[AMR][1000 genomes]
rs1974715	0.83[AMR][1000 genomes]
rs1974716	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2041949	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs2193418	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs3181009	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4295594	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4440560	0.81[AFR][1000 genomes]
rs4727560	0.82[AMR][1000 genomes]
rs4729868	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4729870	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4729871	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4729872	0.82[AMR][1000 genomes]
rs4729875	0.82[AMR][1000 genomes]
rs4729877	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4729878	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4729882	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6465890	0.87[AFR][1000 genomes]
rs6465891	0.83[AMR][1000 genomes]
rs6465893	0.83[AMR][1000 genomes]
rs6465898	0.83[AMR][1000 genomes]
rs6465899	1.00[ASN][1000 genomes]
rs6946968	0.83[AMR][1000 genomes]
rs6946989	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs6959711	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6966872	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6966961	0.83[AMR][1000 genomes]
rs6973787	0.83[AMR][1000 genomes]
rs6976034	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6976794	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6979140	0.87[AMR][1000 genomes]
rs6979470	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7349957	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs7350051	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7792240	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102734000	Weak transcription	Esophagus	oesophagus
2	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
3	chr7:102716600-102735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:102716600-102737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
8	chr7:102716600-102760200	Weak transcription	Lung	lung
9	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
10	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
11	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
13	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
15	chr7:102717600-102738600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
17	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:102722200-102738600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:102722600-102738600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:102723000-102738200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:102723400-102734000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:102723400-102734200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:102723400-102738600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:102723400-102738600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr7:102723600-102734200	Strong transcription	Placenta	Placenta
28	chr7:102723600-102734600	Strong transcription	Fetal Intestine Large	intestine
29	chr7:102723600-102738600	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:102723800-102738600	Strong transcription	Fetal Thymus	thymus
32	chr7:102724000-102735800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
36	chr7:102724200-102735800	Strong transcription	Adipose Nuclei	Adipose
37	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:102725600-102733800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:102725600-102733800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:102725600-102739400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:102725600-102746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:102725600-102746400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:102725800-102737000	Weak transcription	Gastric	stomach
46	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr7:102726200-102742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:102727600-102733800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
50	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain

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